Variant report

Variant	rs559664452
Chromosome Location	chr11:10314525-10314526
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10314422..10317147-chr11:10327890..10331590,5	MCF-7	breast:
2	chr11:9807438..9810264-chr11:10314419..10316538,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction
ENSG00000133805	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	esv3437706	chr11:10313476-10317774	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
2	chr11:10306600-10314800	Weak transcription	Aorta	Aorta
3	chr11:10308800-10314600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr11:10308800-10315000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:10309400-10314600	Weak transcription	Thymus	Thymus
6	chr11:10310000-10314800	Weak transcription	Left Ventricle	heart
7	chr11:10311400-10315000	Weak transcription	Lung	lung
8	chr11:10311400-10315200	Weak transcription	Spleen	Spleen
9	chr11:10311600-10314800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:10312000-10314600	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:10312000-10314800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:10312000-10314800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:10312000-10314800	Weak transcription	Esophagus	oesophagus
14	chr11:10312000-10314800	Weak transcription	Pancreas	Pancrea
15	chr11:10312200-10314800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:10312200-10315000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr11:10312600-10314600	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:10312800-10314600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:10313200-10314600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr11:10313200-10314600	Enhancers	Fetal Heart	heart
21	chr11:10313200-10314800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr11:10313200-10314800	Enhancers	Stomach Mucosa	stomach
23	chr11:10313200-10315000	Weak transcription	Gastric	stomach
24	chr11:10313400-10314600	Enhancers	Primary T cells from cord blood	blood
25	chr11:10313400-10314600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr11:10313600-10314600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr11:10313600-10314600	Enhancers	Primary T helper cells PMA-I stimulated	--
28	chr11:10313600-10314600	Enhancers	K562	blood
29	chr11:10313600-10314800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr11:10313600-10315200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:10313800-10314600	Enhancers	Primary hematopoietic stem cells	blood
32	chr11:10313800-10314600	Active TSS	Brain Anterior Caudate	brain
33	chr11:10313800-10314600	Enhancers	Colon Smooth Muscle	Colon
34	chr11:10313800-10314800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr11:10313800-10314800	Enhancers	Fetal Thymus	thymus
36	chr11:10313800-10315000	Flanking Active TSS	Hela-S3	cervix
37	chr11:10313800-10315000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr11:10314000-10314800	Enhancers	Fetal Muscle Trunk	muscle
39	chr11:10314000-10316400	Active TSS	NHLF	lung
40	chr11:10314200-10314600	Weak transcription	Placenta	Placenta
41	chr11:10314200-10314600	Enhancers	NHEK	skin
42	chr11:10314200-10315000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr11:10314200-10315000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr11:10314200-10315000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:10314200-10315200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr11:10314200-10316600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr11:10314200-10317000	Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr11:10314400-10314600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:10314400-10314600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:10314400-10314600	Active TSS	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links