Variant report

Variant	rs55966937
Chromosome Location	chr11:120705938-120705939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10892628	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10892629	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11218014	1.00[ASN][1000 genomes]
rs11600004	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11601867	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11606105	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11607580	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11608113	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28737445	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4526780	0.86[AMR][1000 genomes]
rs56100434	1.00[ASN][1000 genomes]
rs56129109	1.00[ASN][1000 genomes]
rs7103097	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7123228	0.89[AMR][1000 genomes]
rs73003760	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73007811	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053607	chr11:120540795-120802006	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1038264	chr11:120582595-120799335	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541181	chr11:120582595-120799335	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv832286	chr11:120585843-120745846	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120684000-120707600	Weak transcription	Ovary	ovary
2	chr11:120699400-120729200	Weak transcription	Fetal Lung	lung
3	chr11:120703000-120706800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:120703600-120714600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:120703800-120706200	Weak transcription	HepG2	liver
6	chr11:120704400-120728400	Weak transcription	Brain Anterior Caudate	brain
7	chr11:120704400-120746000	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:120704400-120748800	Weak transcription	Brain Substantia Nigra	brain
9	chr11:120705000-120706600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:120705600-120706400	Enhancers	GM12878-XiMat	blood
11	chr11:120705600-120706800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:120705600-120707200	Weak transcription	Fetal Brain Female	brain
13	chr11:120705800-120706200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:120705800-120706400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:120705800-120707800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:120705800-120707800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:120705800-120708000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:120705800-120708400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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