Variant report

Variant	rs55969144
Chromosome Location	chr12:68407505-68407506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs61923062	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61923064	0.86[AMR][1000 genomes]
rs61925363	0.84[EUR][1000 genomes]
rs73147109	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411149	chr12:68066948-68435533	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:68392600-68413800	Weak transcription	Primary T cells from cord blood	blood
2	chr12:68398400-68422200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr12:68404800-68407800	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:68405400-68407600	Enhancers	Primary B cells from cord blood	blood
5	chr12:68405400-68407600	Enhancers	HSMMtube	muscle
6	chr12:68405400-68408000	Enhancers	Dnd41	blood
7	chr12:68406000-68425200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr12:68406200-68411800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr12:68406200-68413800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr12:68406400-68426000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr12:68407200-68408800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr12:68407400-68409000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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