Variant report

Variant	rs559700041
Chromosome Location	chr15:74163674-74163675
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:24)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:24 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:74163544-74163733	K562	blood:	n/a	n/a
2	GATA1	chr15:74163152-74164040	K562	blood:	n/a	n/a
3	TBL1XR1	chr15:74163504-74163770	K562	blood:	n/a	n/a
4	NR3C1	chr15:74163325-74163738	A549	lung:	n/a	n/a
5	MAZ	chr15:74163482-74163699	K562	blood:	n/a	n/a
6	ATF1	chr15:74163340-74163794	K562	blood:	n/a	n/a
7	CEBPB	chr15:74163440-74163689	K562	blood:	n/a	n/a
8	JUND	chr15:74163430-74163761	K562	blood:	n/a	n/a
9	EP300	chr15:74163458-74163729	K562	blood:	n/a	n/a
10	ELF1	chr15:74163509-74163754	K562	blood:	n/a	n/a
11	GATA2	chr15:74163163-74163930	HUVEC	blood vessel:	n/a	chr15:74163598-74163612
12	CCNT2	chr15:74163436-74163773	K562	blood:	n/a	n/a
13	MYC	chr15:74163433-74163819	K562	blood:	n/a	n/a
14	TEAD4	chr15:74163465-74163715	K562	blood:	n/a	n/a
15	GATA1	chr15:74163327-74163817	PBDE	blood:	n/a	n/a
16	TAL1	chr15:74163458-74163693	K562	blood:	n/a	n/a
17	NR3C1	chr15:74163380-74163698	A549	lung:	n/a	n/a
18	NR3C1	chr15:74163258-74163719	A549	lung:	n/a	n/a
19	TEAD4	chr15:74163375-74163874	K562	blood:	n/a	n/a
20	BHLHE40	chr15:74163430-74163817	K562	blood:	n/a	n/a
21	SPI1	chr15:74163518-74163706	K562	blood:	n/a	n/a
22	FOS	chr15:74163353-74163748	HUVEC	blood vessel:	n/a	n/a
23	RCOR1	chr15:74163407-74163791	K562	blood:	n/a	n/a
24	MYC	chr15:74163398-74163770	K562	blood:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74138773..74141661-chr15:74162026..74163857,2	MCF-7	breast:

No data

Variant related genes	Relation type
TBC1D21	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3487225	chr15:74163341-74164459	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3487226	chr15:74163341-74164459	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3496464	chr15:74163499-74165397	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74158600-74164600	Enhancers	Right Atrium	heart
3	chr15:74161600-74163800	Enhancers	Left Ventricle	heart
4	chr15:74161600-74164600	Enhancers	Right Ventricle	heart
5	chr15:74162600-74164600	Enhancers	Fetal Intestine Large	intestine
6	chr15:74162600-74164800	Enhancers	Fetal Intestine Small	intestine
7	chr15:74163000-74164600	Enhancers	Stomach Mucosa	stomach
8	chr15:74163000-74164600	Enhancers	Thymus	Thymus
9	chr15:74163200-74163800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:74163200-74163800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr15:74163200-74163800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr15:74163200-74163800	Enhancers	Fetal Thymus	thymus
13	chr15:74163200-74163800	Enhancers	Pancreas	Pancrea
14	chr15:74163200-74163800	Enhancers	HUVEC	blood vessel
15	chr15:74163200-74164000	Enhancers	K562	blood
16	chr15:74163200-74164400	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr15:74163200-74164400	Enhancers	Fetal Heart	heart
18	chr15:74163200-74164800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr15:74163400-74163800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:74163400-74163800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr15:74163400-74163800	Bivalent Enhancer	Adipose Nuclei	Adipose
22	chr15:74163400-74163800	Enhancers	Ovary	ovary
23	chr15:74163400-74163800	Bivalent Enhancer	NHEK	skin
24	chr15:74163400-74164400	Enhancers	Primary hematopoietic stem cells	blood
25	chr15:74163600-74163800	Bivalent Enhancer	A549	lung
26	chr15:74163600-74164600	Enhancers	Duodenum Mucosa	Duodenum
27	chr15:74163600-74164800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr15:74163600-74165200	Enhancers	Osteobl	bone
29	chr15:74163600-74165600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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