Variant report

Variant	rs559702749
Chromosome Location	chr12:122124293-122124294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:122064331..122066305-chr12:122123658..122126561,2	MCF-7	breast:
2	chr12:121788975..121791215-chr12:122123232..122125237,2	K562	blood:
3	chr12:122115091..122119007-chr12:122123231..122126528,5	K562	blood:
4	chr12:122114958..122116591-chr12:122123026..122125296,2	K562	blood:
5	chr12:122122153..122127459-chr12:122235506..122240049,10	MCF-7	breast:
6	chr12:122122979..122124962-chr12:122238529..122240988,3	K562	blood:
7	chr12:121931227..121933297-chr12:122123567..122126169,2	K562	blood:
8	chr12:122123146..122128451-chr12:122240721..122245772,6	MCF-7	breast:
9	chr12:122123518..122126727-chr12:122231097..122233939,3	MCF-7	breast:
10	chr12:122101998..122103824-chr12:122123372..122125942,2	K562	blood:
11	chr12:122063044..122066006-chr12:122123378..122126114,2	MCF-7	breast:
12	chr12:122119277..122120923-chr12:122122798..122124808,2	K562	blood:
13	chr12:122103388..122106454-chr12:122121633..122126620,5	K562	blood:
14	chr12:122123533..122126462-chr12:122235379..122238113,4	K562	blood:
15	chr12:122122765..122125125-chr12:122221091..122223983,2	K562	blood:
16	chr12:121903895..121905502-chr12:122123601..122125123,2	K562	blood:
17	chr12:122123408..122125129-chr12:122232861..122235031,2	K562	blood:
18	chr12:122123715..122126577-chr12:122127730..122130596,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272849	Chromatin interaction
ENSG00000139725	Chromatin interaction
ENSG00000139718	Chromatin interaction
ENSG00000212694	Chromatin interaction
ENSG00000182500	Chromatin interaction
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053272	chr12:121956483-122132477	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	nsv529868	chr12:121956483-122944265	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	nsv1040169	chr12:122096825-122209555	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv3326224	chr12:122123920-122124353	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:122111400-122124400	Weak transcription	Brain Anterior Caudate	brain
2	chr12:122111400-122124800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:122111600-122124600	Weak transcription	Fetal Kidney	kidney
4	chr12:122117000-122125800	Weak transcription	K562	blood
5	chr12:122117200-122125000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr12:122117600-122124800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:122117800-122124800	Weak transcription	Brain Substantia Nigra	brain
8	chr12:122118000-122125000	Weak transcription	Brain Germinal Matrix	brain
9	chr12:122118800-122124400	Weak transcription	Brain Hippocampus Middle	brain
10	chr12:122120200-122124400	Weak transcription	Hela-S3	cervix
11	chr12:122120200-122125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr12:122121800-122149600	Weak transcription	Right Atrium	heart
13	chr12:122122600-122125000	Weak transcription	HepG2	liver
14	chr12:122122800-122124800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr12:122123600-122124600	Enhancers	Fetal Thymus	thymus
16	chr12:122123600-122124800	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr12:122123600-122125000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr12:122123800-122124400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr12:122123800-122124400	Enhancers	Dnd41	blood
20	chr12:122123800-122124600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr12:122123800-122125000	Enhancers	Primary B cells from peripheral blood	blood
22	chr12:122123800-122125000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr12:122123800-122125000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr12:122123800-122125000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr12:122123800-122125000	Weak transcription	Ovary	ovary
26	chr12:122123800-122125200	Enhancers	Primary T cells from cord blood	blood
27	chr12:122123800-122125600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr12:122124200-122124400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr12:122124200-122124400	Enhancers	Primary B cells from cord blood	blood
30	chr12:122124200-122124400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:122124200-122124400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr12:122124200-122124400	Enhancers	Placenta	Placenta
33	chr12:122124200-122124400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr12:122124200-122124600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr12:122124200-122124600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr12:122124200-122124800	Enhancers	Colon Smooth Muscle	Colon
37	chr12:122124200-122124800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr12:122124200-122124800	Enhancers	Skeletal Muscle Male	skeletal muscle
39	chr12:122124200-122125000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr12:122124200-122125000	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr12:122124200-122125000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr12:122124200-122125000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr12:122124200-122125000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
44	chr12:122124200-122125000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:122124200-122125000	Enhancers	Fetal Muscle Trunk	muscle
46	chr12:122124200-122125000	Enhancers	Fetal Stomach	stomach
47	chr12:122124200-122125400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
48	chr12:122124200-122125400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
49	chr12:122124200-122125400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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