Variant report

Variant	rs559728948
Chromosome Location	chr6:11617098-11617099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11615083..11617199-chr6:12286030..12287822,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3442943	chr6:11616541-11619014	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv3436811	chr6:11616716-11618514	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11610200-11631400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:11611200-11622600	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:11613200-11617200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:11615600-11621400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:11616400-11619600	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:11616600-11618200	Weak transcription	NHLF	lung
7	chr6:11616600-11622200	Weak transcription	Psoas Muscle	Psoas
8	chr6:11616800-11618200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:11616800-11618200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:11616800-11618400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:11616800-11618400	Weak transcription	A549	lung
12	chr6:11616800-11621200	Weak transcription	Fetal Stomach	stomach
13	chr6:11616800-11622200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:11616800-11622400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr6:11616800-11622600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:11616800-11622800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:11616800-11623000	Weak transcription	Lung	lung
18	chr6:11617000-11618000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:11617000-11618200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr6:11617000-11618200	Weak transcription	HSMM	muscle
21	chr6:11617000-11618200	Weak transcription	HUVEC	blood vessel
22	chr6:11617000-11618200	Weak transcription	NH-A	brain
23	chr6:11617000-11618200	Weak transcription	NHDF-Ad	bronchial
24	chr6:11617000-11618400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:11617000-11618400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:11617000-11619600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:11617000-11619600	Weak transcription	HSMMtube	muscle

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