Variant report

Variant	rs559736877
Chromosome Location	chr6:71666277-71666278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:71416313..71416967-chr6:71665219..71666338,4	MCF-7	breast:
2	chr6:71415810..71416633-chr6:71665559..71666663,3	MCF-7	breast:
3	chr6:71230031..71231237-chr6:71665008..71666316,7	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886148	chr6:71623253-71694742	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3339485	chr6:71665256-71667804	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71663600-71667000	Active TSS	Brain Cingulate Gyrus	brain
2	chr6:71663800-71667200	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:71663800-71667600	Active TSS	Brain Anterior Caudate	brain
4	chr6:71664200-71667600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:71664600-71667000	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
6	chr6:71664600-71667400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:71664800-71666800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
8	chr6:71664800-71667200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
9	chr6:71664800-71667400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
10	chr6:71664800-71667400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
11	chr6:71664800-71667800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr6:71665000-71667000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
13	chr6:71665000-71667000	Active TSS	Fetal Brain Female	brain
14	chr6:71665000-71667400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr6:71665000-71667600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr6:71665000-71667600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr6:71665200-71666400	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:71665200-71666400	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr6:71665200-71666400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr6:71665200-71666400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:71665200-71666400	Flanking Active TSS	Right Ventricle	heart
22	chr6:71665200-71666400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
23	chr6:71665200-71666400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
24	chr6:71665200-71666400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
25	chr6:71665200-71666800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr6:71665200-71666800	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr6:71665200-71666800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
28	chr6:71665200-71666800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
29	chr6:71665200-71667000	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
30	chr6:71665200-71667000	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:71665200-71667000	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:71665200-71667000	Flanking Bivalent TSS/Enh	Placenta Amnion	Placenta Amnion
33	chr6:71665200-71667200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:71665200-71667200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr6:71665200-71667200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:71665200-71667200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:71665200-71667200	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
38	chr6:71665200-71667200	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr6:71665200-71667200	Flanking Active TSS	Pancreas	Pancrea
40	chr6:71665200-71667200	Bivalent/Poised TSS	HSMM	muscle
41	chr6:71665200-71667400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr6:71665200-71667400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:71665200-71667400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:71665200-71667400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr6:71665200-71667400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
46	chr6:71665200-71667400	Active TSS	Brain Angular Gyrus	brain
47	chr6:71665200-71667400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
48	chr6:71665400-71666400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:71665400-71666600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:71665400-71666600	Enhancers	Fetal Heart	heart

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