Variant report

Variant	rs559743497
Chromosome Location	chr6:54732775-54732776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54704497..54716767-chr6:54728797..54750947,71	MCF-7	breast:
2	chr6:54721521..54725055-chr6:54731692..54735464,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction
ENSG00000224984	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3334773	chr6:54732770-54733058	Weak transcription Genic enhancers Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54725600-54737400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr6:54725600-54737600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:54726600-54739600	Weak transcription	Small Intestine	intestine
4	chr6:54727200-54732800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:54727200-54748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr6:54727400-54740400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:54727400-54743800	Weak transcription	Pancreas	Pancrea
8	chr6:54728600-54732800	Weak transcription	NHEK	skin
9	chr6:54729200-54733400	Weak transcription	HMEC	breast
10	chr6:54730400-54733600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr6:54730400-54735800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr6:54730400-54743800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:54731000-54733400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr6:54731200-54732800	Enhancers	Stomach Mucosa	stomach
15	chr6:54731600-54737200	Weak transcription	Hela-S3	cervix
16	chr6:54731600-54739400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:54731800-54733400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:54731800-54738800	Weak transcription	Fetal Intestine Large	intestine
19	chr6:54731800-54738800	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:54732200-54739200	Weak transcription	Fetal Intestine Small	intestine
21	chr6:54732600-54734600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links