Variant report

Variant	rs559749226
Chromosome Location	chr13:51118642-51118643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51115179..51116952-chr13:51118323..51120008,2	MCF-7	breast:
2	chr13:51113494..51115464-chr13:51117918..51119427,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	nsv522672	chr13:51117562-51119737	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51116200-51119200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:51116400-51119000	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr13:51116600-51118800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr13:51116600-51119000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr13:51116600-51119200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr13:51116600-51119200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:51116600-51119200	Enhancers	HSMMtube	muscle
8	chr13:51116800-51119000	Enhancers	Fetal Lung	lung
9	chr13:51117400-51119000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr13:51117600-51119000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:51117600-51119200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr13:51117600-51122400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:51117800-51119000	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr13:51118000-51118800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr13:51118000-51119000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr13:51118000-51122600	Weak transcription	Adipose Nuclei	Adipose
17	chr13:51118000-51123000	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:51118200-51119000	Enhancers	H1 Cell Line	embryonic stem cell
19	chr13:51118200-51119000	Enhancers	Osteobl	bone
20	chr13:51118400-51118800	Enhancers	Brain Substantia Nigra	brain
21	chr13:51118400-51119200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:51118400-51119200	Weak transcription	Fetal Stomach	stomach
23	chr13:51118400-51120000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr13:51118400-51122000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr13:51118400-51122200	Weak transcription	Fetal Heart	heart
26	chr13:51118600-51118800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
27	chr13:51118600-51119000	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr13:51118600-51120000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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