Variant report

Variant	rs559759350
Chromosome Location	chr14:69725791-69725792
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:69725565-69727375	A549	lung:	n/a	chr14:69726982-69726991
2	REST	chr14:69725769-69728816	H1-neurons	neurons:	n/a	chr14:69727673-69727686 chr14:69728737-69728746 chr14:69726368-69726381 chr14:69726451-69726464

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69618346..69620839-chr14:69725644..69728530,2	K562	blood:

Variant related genes	Relation type
GALNT16	TF binding region
ENSG00000139990	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3421651	chr14:69725724-69728572	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69694000-69726000	Weak transcription	Right Atrium	heart
2	chr14:69704800-69725800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:69708400-69725800	Weak transcription	Pancreas	Pancrea
4	chr14:69709400-69725800	Weak transcription	Brain Anterior Caudate	brain
5	chr14:69709400-69726400	Weak transcription	Gastric	stomach
6	chr14:69714800-69726200	Weak transcription	Aorta	Aorta
7	chr14:69717400-69725800	Weak transcription	Left Ventricle	heart
8	chr14:69723000-69725800	Weak transcription	Right Ventricle	heart
9	chr14:69723800-69725800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr14:69725000-69725800	Enhancers	Fetal Brain Female	brain
11	chr14:69725400-69725800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:69725400-69726000	Enhancers	Brain Angular Gyrus	brain
13	chr14:69725400-69726200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:69725400-69726400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:69725400-69728400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
16	chr14:69725600-69725800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:69725600-69725800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr14:69725600-69725800	Enhancers	Fetal Heart	heart
19	chr14:69725600-69726000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:69725600-69726000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:69725600-69726000	Bivalent Enhancer	Fetal Intestine Small	intestine
22	chr14:69725600-69726000	Bivalent Enhancer	Fetal Lung	lung
23	chr14:69725600-69726000	Bivalent Enhancer	Fetal Muscle Leg	muscle
24	chr14:69725600-69726200	Enhancers	Fetal Brain Male	brain
25	chr14:69725600-69726400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
26	chr14:69725600-69728400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links