Variant report
Variant | rs55976039 |
---|---|
Chromosome Location | chr1:210345931-210345932 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11119426 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs11119430 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11119432 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs12045428 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1556606 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs17015701 | 0.91[EUR][1000 genomes] |
rs2357430 | 0.84[AMR][1000 genomes] |
rs2485896 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4844949 | 0.81[ASN][1000 genomes] |
rs4844953 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6701631 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7519328 | 0.90[EUR][1000 genomes] |
rs7534723 | 0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7543674 | 0.84[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1014034 | chr1:209759648-210501731 | Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
2 | nsv873144 | chr1:210252522-210347417 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv873145 | chr1:210302595-210347417 | Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv873146 | chr1:210312760-210347417 | Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:210339400-210361200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |