Variant report

Variant	rs559766301
Chromosome Location	chr11:85195223-85195224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:47)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:47 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:156186383..156187035-chr11:85195090..85195711,2	MCF-7	breast:
2	chr11:85193729..85196593-chr2:133010514..133013451,3	K562	blood:
3	chr11:85194519..85195708-chr17:33477647..33478310,15	MCF-7	breast:
4	chr11:85194556..85195599-chr21:9825626..9826659,3	MCF-7	breast:
5	chr11:85193664..85196579-chr19:24184471..24186975,3	MCF-7	breast:
6	chr11:85194707..85195726-chr19:24185012..24186176,4	MCF-7	breast:
7	chr11:85195109..85196717-chr16:33964349..33967903,4	K562	blood:
8	chr11:85195169..85196687-chr19:24184953..24186982,2	MCF-7	breast:
9	chr11:85193727..85196636-chr17:31148107..31149878,3	MCF-7	breast:
10	chr11:85195049..85196754-chr19:24184306..24186751,3	K562	blood:
11	chr11:85193624..85196703-chr2:133010749..133014388,3	K562	blood:
12	chr11:85193525..85196750-chr20:26187839..26191543,6	K562	blood:
13	chr11:85193511..85196736-chr17:33476647..33479728,15	K562	blood:
14	chr11:85195086..85195758-chr4:169753807..169754327,3	MCF-7	breast:
15	chr11:85194535..85195243-chr17:33477642..33478335,12	MCF-7	breast:
16	chr11:85194537..85195256-chr17:33477651..33478689,13	K562	blood:
17	chr11:85193614..85195226-chr21:9825927..9828995,5	MCF-7	breast:
18	chr11:85193537..85196743-chr16:33959805..33967587,15	K562	blood:
19	chr11:85194535..85195256-chr17:33477667..33478335,18	MCF-7	breast:
20	chr11:85195072..85196733-chr9:79185153..79186653,2	K562	blood:
21	chr11:85195036..85195776-chr2:71565795..71566299,2	MCF-7	breast:
22	chr1:91851562..91854585-chr11:85195040..85196753,3	K562	blood:
23	chr11:85193599..85196549-chr19:24184495..24187673,3	K562	blood:
24	chr11:85193718..85196622-chr21:9824164..9827074,2	MCF-7	breast:
25	chr11:85194634..85195770-chr21:9826689..9827668,3	MCF-7	breast:
26	chr11:85193550..85196726-chr21:9824306..9828726,11	K562	blood:
27	chr1:206858043..206859563-chr11:85195223..85196734,2	K562	blood:
28	chr11:85195071..85195734-chr6:137143975..137144475,2	K562	blood:
29	chr11:85195062..85195778-chr6:144328873..144329374,2	HCT-116	colon:
30	chr11:85195161..85196755-chr12:20702902..20704406,2	K562	blood:
31	chr11:85193550..85196769-chr21:9824428..9828726,11	K562	blood:
32	chr1:156184765..156186541-chr11:85195122..85196659,2	K562	blood:
33	chr11:85194574..85195759-chr19:24184744..24186176,10	MCF-7	breast:
34	chr11:85195015..85195732-chr21:9826213..9827241,3	MCF-7	breast:
35	chr11:85194679..85195667-chr19:24185002..24186153,3	MCF-7	breast:
36	chr11:85193628..85196531-chr2:133032953..133034631,2	K562	blood:
37	chr11:85194752..85195535-chr2:115694651..115695616,2	MCF-7	breast:
38	chr11:85194561..85195749-chr19:24185001..24186153,7	MCF-7	breast:
39	chr11:85195110..85195625-chr13:46288167..46288667,2	K562	blood:
40	chr11:85195106..85195725-chr16:33963665..33964258,2	MCF-7	breast:
41	chr11:85193623..85195251-chr6:110677855..110679355,2	MCF-7	breast:
42	chr11:85193511..85196736-chr17:33476657..33479798,16	K562	blood:
43	chr11:85194519..85195599-chr17:33477658..33478328,13	MCF-7	breast:
44	chr10:24497863..24498383-chr11:85195069..85195755,2	MCF-7	breast:
45	chr11:85195041..85196746-chr2:230044008..230046987,2	K562	blood:
46	chr11:85194756..85195260-chr2:115694618..115695142,2	MCF-7	breast:
47	chr11:85193576..85195251-chr17:33476660..33478297,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000207986	Chromatin interaction
ENSG00000249609	Chromatin interaction
ENSG00000120549	Chromatin interaction
ENSG00000202174	Chromatin interaction
ENSG00000264462	Chromatin interaction
ENSG00000162889	Chromatin interaction
ENSG00000053328	Chromatin interaction
ENSG00000227195	Chromatin interaction
ENSG00000264063	Chromatin interaction
ENSG00000256642	Chromatin interaction
ENSG00000201966	Chromatin interaction
ENSG00000200434	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044370	chr11:84748993-85293233	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv898044	chr11:84895033-85220773	ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1051155	chr11:85006564-85721261	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
4	nsv541110	chr11:85006564-85721261	Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
5	nsv1035905	chr11:85130543-85220773	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv1050363	chr11:85163437-85293233	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541111	chr11:85163437-85293233	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv898046	chr11:85180409-85300458	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv898047	chr11:85180409-85377707	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
10	esv2758279	chr11:85180480-85603988	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
11	esv2759845	chr11:85180480-85603988	Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
12	esv3439535	chr11:85195006-85195241	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:85194800-85195400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
2	chr11:85194800-85195400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:85194800-85195400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:85194800-85195400	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
5	chr11:85194800-85195400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:85194800-85195400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr11:85194800-85195400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
8	chr11:85194800-85195400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr11:85194800-85195400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:85194800-85195400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
11	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
12	chr11:85194800-85195400	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
13	chr11:85194800-85195400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
14	chr11:85194800-85195400	ZNF genes & repeats	Primary T cells from cord blood	blood
15	chr11:85194800-85195400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr11:85194800-85195400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr11:85194800-85195400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:85194800-85195400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
19	chr11:85194800-85195400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:85194800-85195400	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
21	chr11:85194800-85195400	ZNF genes & repeats	Adipose Nuclei	Adipose
22	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Aorta	Aorta
23	chr11:85194800-85195400	ZNF genes & repeats	Colonic Mucosa	Colon
24	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
25	chr11:85194800-85195400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
26	chr11:85194800-85195400	ZNF genes & repeats	Fetal Intestine Large	intestine
27	chr11:85194800-85195400	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr11:85194800-85195400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
29	chr11:85194800-85195400	ZNF genes & repeats	Fetal Muscle Leg	muscle
30	chr11:85194800-85195400	ZNF genes & repeats	Fetal Stomach	stomach
31	chr11:85194800-85195400	ZNF genes & repeats	Fetal Thymus	thymus
32	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Gastric	stomach
33	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Left Ventricle	heart
34	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Lung	lung
35	chr11:85194800-85195400	ZNF genes & repeats	Ovary	ovary
36	chr11:85194800-85195400	ZNF genes & repeats	Pancreas	Pancrea
37	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
38	chr11:85194800-85195400	ZNF genes & repeats	Right Atrium	heart
39	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Right Ventricle	heart
40	chr11:85194800-85195400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
41	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Small Intestine	intestine
42	chr11:85194800-85195400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
43	chr11:85194800-85195400	ZNF genes & repeats	Thymus	Thymus
44	chr11:85194800-85195400	ZNF genes & repeats	Spleen	Spleen
45	chr11:85194800-85195400	ZNF genes & repeats	Dnd41	blood
46	chr11:85194800-85195400	ZNF genes & repeats	HSMMtube	muscle
47	chr11:85194800-85195400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
48	chr11:85195000-85195400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
49	chr11:85195000-85195400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:85195000-85195400	ZNF genes & repeats	Brain Germinal Matrix	brain

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