The 2.0 version of rSNPBase

Variant report

Variant rs559779371
Chromosome Location chr2:178286677-178286678
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:72 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:178258800-178294200 Weak transcription Thymus Thymus
2 chr2:178263400-178291800 Weak transcription Duodenum Mucosa Duodenum
3 chr2:178264200-178291600 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr2:178265600-178287000 Weak transcription K562 blood
5 chr2:178270400-178294400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr2:178271800-178291600 Weak transcription Primary T helper cells PMA-I stimulated --
7 chr2:178272800-178295200 Weak transcription Left Ventricle heart
8 chr2:178273000-178288800 Weak transcription GM12878-XiMat blood
9 chr2:178273400-178288600 Weak transcription Primary T cells from cord blood blood
10 chr2:178274600-178291800 Weak transcription Primary B cells from cord blood blood
11 chr2:178276400-178291400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr2:178276800-178289800 Weak transcription Fetal Intestine Large intestine
13 chr2:178276800-178294400 Weak transcription Psoas Muscle Psoas
14 chr2:178277400-178291800 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr2:178279600-178294400 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr2:178280200-178291600 Weak transcription Primary T cells fromperipheralblood blood
17 chr2:178280400-178296000 Weak transcription Small Intestine intestine
18 chr2:178280800-178294400 Weak transcription Rectal Mucosa Donor 29 rectum
19 chr2:178281200-178289400 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr2:178281200-178291600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr2:178281200-178292200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
22 chr2:178281800-178291800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
23 chr2:178282800-178287200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr2:178283000-178294600 Weak transcription Fetal Kidney kidney
25 chr2:178283800-178294200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr2:178283800-178295200 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr2:178284000-178294200 Weak transcription NHLF lung
28 chr2:178284200-178291600 Weak transcription Fetal Lung lung
29 chr2:178284400-178286800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr2:178284400-178289400 Weak transcription Adipose Nuclei Adipose
31 chr2:178284400-178291800 Weak transcription Duodenum Smooth Muscle Duodenum
32 chr2:178284400-178292000 Weak transcription iPS-20b Cell Line embryonic stem cell
33 chr2:178284400-178292000 Weak transcription Rectal Smooth Muscle rectum
34 chr2:178284400-178294000 Weak transcription Fetal Thymus thymus
35 chr2:178284600-178286800 Weak transcription Osteobl bone
36 chr2:178284600-178294000 Weak transcription HSMM muscle
37 chr2:178284600-178294400 Weak transcription Muscle Satellite Cultured Cells --
38 chr2:178284600-178295800 Weak transcription Colon Smooth Muscle Colon
39 chr2:178284800-178291000 Weak transcription Brain Angular Gyrus brain
40 chr2:178284800-178294200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
41 chr2:178284800-178294400 Weak transcription Liver Liver
42 chr2:178285000-178286800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr2:178285000-178287000 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr2:178285000-178287600 Strong transcription Primary Natural Killer cells fromperipheralblood blood
45 chr2:178285000-178289800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr2:178285000-178291600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr2:178285000-178294000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr2:178285400-178287600 Strong transcription Primary monocytes fromperipheralblood blood
49 chr2:178285400-178289000 Strong transcription Primary hematopoietic stem cells blood
50 chr2:178285400-178289000 Strong transcription Dnd41 blood

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Last update: Aug 31, 2015