Variant report

Variant rs559786993
Chromosome Location chr17:19556601-19556602
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:19552800-19557600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr17:19552800-19557800 Weak transcription Placenta Placenta
3 chr17:19553200-19556800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr17:19553200-19557800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr17:19553200-19558200 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr17:19553200-19558200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
7 chr17:19553200-19558400 Weak transcription Primary T cells from cord blood blood
8 chr17:19553200-19566800 Weak transcription Primary B cells from cord blood blood
9 chr17:19553200-19577400 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr17:19553200-19580000 Weak transcription Placenta Amnion Placenta Amnion
11 chr17:19553400-19556800 Weak transcription H9 Cell Line embryonic stem cell
12 chr17:19553400-19556800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr17:19553400-19558200 Weak transcription Primary hematopoietic stem cells blood
14 chr17:19553400-19566400 Weak transcription Primary hematopoietic stem cells short term culture blood
15 chr17:19553600-19557600 Weak transcription Ovary ovary
16 chr17:19553800-19556800 Weak transcription Spleen Spleen
17 chr17:19553800-19560000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
18 chr17:19554400-19559400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
19 chr17:19554600-19557000 Enhancers Stomach Mucosa stomach
20 chr17:19554800-19574400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
21 chr17:19555000-19558200 Weak transcription ES-I3 Cell Line embryonic stem cell
22 chr17:19555000-19558200 Weak transcription Fetal Brain Male brain
23 chr17:19555000-19558400 Weak transcription HSMM muscle
24 chr17:19555000-19560400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
25 chr17:19555000-19561400 Strong transcription iPS-20b Cell Line embryonic stem cell
26 chr17:19555000-19561400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
27 chr17:19555000-19563400 Strong transcription Fetal Stomach stomach
28 chr17:19555000-19568800 Weak transcription NH-A brain
29 chr17:19555000-19581800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
30 chr17:19555000-19582800 Weak transcription HUVEC blood vessel
31 chr17:19555200-19557400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
32 chr17:19555200-19557600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
33 chr17:19555200-19559200 Weak transcription Primary T helper cells PMA-I stimulated --
34 chr17:19555200-19566400 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr17:19555200-19566600 Weak transcription NHDF-Ad bronchial
36 chr17:19555200-19569800 Strong transcription Fetal Muscle Trunk muscle
37 chr17:19555200-19576400 Weak transcription Primary T killer memory cells from peripheral blood blood
38 chr17:19555400-19558200 Weak transcription Brain Substantia Nigra brain
39 chr17:19555400-19559000 Weak transcription Psoas Muscle Psoas
40 chr17:19555400-19570000 Strong transcription Fetal Muscle Leg muscle
41 chr17:19555600-19556800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr17:19555600-19556800 Weak transcription Sigmoid Colon Sigmoid Colon
43 chr17:19555600-19557200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
44 chr17:19555600-19557400 Weak transcription Right Ventricle heart
45 chr17:19555600-19558000 Weak transcription Rectal Mucosa Donor 31 rectum
46 chr17:19555600-19558200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
47 chr17:19555600-19558200 Weak transcription GM12878-XiMat blood
48 chr17:19555600-19558400 Weak transcription HSMMtube muscle
49 chr17:19555600-19562200 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr17:19555600-19567200 Weak transcription Right Atrium heart

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