The 2.0 version of rSNPBase

Variant report

Variant rs559787172
Chromosome Location chr1:85152229-85152230
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:85106400-85155400 Weak transcription Sigmoid Colon Sigmoid Colon
2 chr1:85108000-85155000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr1:85124600-85154400 Weak transcription A549 lung
4 chr1:85124800-85153800 Weak transcription Hela-S3 cervix
5 chr1:85125000-85153400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr1:85125000-85153600 Weak transcription Fetal Kidney kidney
7 chr1:85126200-85154000 Weak transcription Duodenum Smooth Muscle Duodenum
8 chr1:85126400-85154200 Weak transcription Primary T cells fromperipheralblood blood
9 chr1:85126400-85154800 Weak transcription Fetal Muscle Leg muscle
10 chr1:85126400-85155200 Weak transcription Left Ventricle heart
11 chr1:85126600-85153400 Weak transcription Cortex derived primary cultured neurospheres brain
12 chr1:85126600-85154400 Weak transcription Fetal Stomach stomach
13 chr1:85127800-85154400 Weak transcription Brain Germinal Matrix brain
14 chr1:85128200-85153600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
15 chr1:85128600-85153200 Weak transcription Dnd41 blood
16 chr1:85130400-85153600 Weak transcription NHDF-Ad bronchial
17 chr1:85134400-85153400 Weak transcription NHLF lung
18 chr1:85138000-85154800 Weak transcription HSMMtube muscle
19 chr1:85138400-85153400 Weak transcription Fetal Thymus thymus
20 chr1:85138600-85153400 Weak transcription HSMM muscle
21 chr1:85138800-85155000 Weak transcription Primary Natural Killer cells fromperipheralblood blood
22 chr1:85139800-85152800 Weak transcription Primary T cells from cord blood blood
23 chr1:85139800-85153000 Weak transcription Primary T helper naive cells fromperipheralblood blood
24 chr1:85140000-85154200 Weak transcription Primary T helper naive cells from peripheral blood blood
25 chr1:85140800-85153400 Weak transcription NHEK skin
26 chr1:85141000-85153600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
27 chr1:85141000-85154200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr1:85141000-85154200 Weak transcription Duodenum Mucosa Duodenum
29 chr1:85141400-85152800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
30 chr1:85141400-85154200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr1:85141600-85152800 Weak transcription Brain Anterior Caudate brain
32 chr1:85141800-85154200 Weak transcription iPS-18 Cell Line embryonic stem cell
33 chr1:85142200-85154200 Weak transcription HUES64 Cell Line embryonic stem cell
34 chr1:85142200-85154200 Weak transcription iPS-20b Cell Line embryonic stem cell
35 chr1:85143600-85152800 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr1:85143600-85153400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
37 chr1:85143600-85154600 Weak transcription Primary B cells from cord blood blood
38 chr1:85143800-85154200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
39 chr1:85144400-85154400 Weak transcription Primary hematopoietic stem cells blood
40 chr1:85144600-85153200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr1:85146000-85153400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:85146800-85153200 Weak transcription Osteobl bone
43 chr1:85147600-85152800 Weak transcription Primary T killer naive cells fromperipheralblood blood
44 chr1:85150800-85153400 Enhancers Fetal Intestine Small intestine
45 chr1:85151400-85152400 Flanking Active TSS K562 blood
46 chr1:85151400-85152600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
47 chr1:85151400-85153200 Weak transcription Fetal Intestine Large intestine
48 chr1:85151400-85153600 Weak transcription Fetal Heart heart
49 chr1:85151400-85154200 Weak transcription ES-I3 Cell Line embryonic stem cell
50 chr1:85151400-85154400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015