Variant report

Variant	rs559787708
Chromosome Location	chr7:66696838-66696839
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
4	nsv831019	chr7:66516808-66720485	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1032237	chr7:66644492-66785029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
6	nsv970518	chr7:66647675-66742783	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv607415	chr7:66693028-66698793	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3502932	chr7:66696267-66700415	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3502933	chr7:66696792-66699463	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3502931	chr7:66696792-66700465	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv1766092	chr7:66696837-66696838	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66654600-66704600	Weak transcription	Gastric	stomach
2	chr7:66654600-66709600	Weak transcription	Lung	lung
3	chr7:66658000-66703200	Weak transcription	Ovary	ovary
4	chr7:66660600-66701600	Weak transcription	Fetal Kidney	kidney
5	chr7:66660600-66703000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:66665600-66706800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr7:66665800-66703400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:66667800-66738400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:66670600-66713800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr7:66675800-66706600	Weak transcription	Aorta	Aorta
11	chr7:66675800-66706800	Weak transcription	Primary T cells from cord blood	blood
12	chr7:66676000-66702800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr7:66685000-66717000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr7:66687000-66706800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr7:66688200-66706800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr7:66688400-66708200	Weak transcription	Dnd41	blood
17	chr7:66688400-66710000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:66688800-66701000	Weak transcription	Left Ventricle	heart
19	chr7:66688800-66701400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:66688800-66703800	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr7:66688800-66716600	Weak transcription	Fetal Intestine Large	intestine
22	chr7:66690600-66706000	Weak transcription	Primary B cells from cord blood	blood
23	chr7:66691000-66701000	Weak transcription	Fetal Stomach	stomach
24	chr7:66691400-66705000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr7:66691600-66702600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:66691600-66716400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr7:66691800-66701200	Weak transcription	Psoas Muscle	Psoas
28	chr7:66691800-66716200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr7:66691800-66716400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:66692000-66700000	Weak transcription	HSMM	muscle
31	chr7:66692000-66701000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr7:66692000-66707600	Weak transcription	Osteobl	bone
33	chr7:66692000-66708000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:66692000-66710600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr7:66692200-66703600	Weak transcription	K562	blood
36	chr7:66692400-66698400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr7:66693200-66707400	Weak transcription	Thymus	Thymus
38	chr7:66693400-66703800	Weak transcription	Fetal Intestine Small	intestine
39	chr7:66693400-66707800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr7:66694000-66707000	Weak transcription	Brain Anterior Caudate	brain
41	chr7:66694400-66715600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr7:66694800-66766600	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:66695000-66716000	Weak transcription	Liver	Liver
44	chr7:66695200-66701000	Weak transcription	Adipose Nuclei	Adipose
45	chr7:66695400-66710800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr7:66695600-66701200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:66695600-66705400	Weak transcription	HepG2	liver
48	chr7:66696000-66716800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:66696400-66701000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr7:66696400-66708400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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