Variant report

Variant	rs55979215
Chromosome Location	chr1:85245108-85245109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs17115416	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17115455	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55921361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85240200-85245200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr1:85240800-85246200	Weak transcription	Esophagus	oesophagus
3	chr1:85241000-85247600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:85241000-85263600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr1:85241200-85245400	Weak transcription	HMEC	breast
6	chr1:85243000-85245400	Weak transcription	Osteobl	bone
7	chr1:85243200-85245200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:85243800-85245400	Weak transcription	Fetal Thymus	thymus
9	chr1:85244000-85246800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr1:85244200-85245400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr1:85244200-85246600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:85244400-85245400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:85244600-85245600	Weak transcription	NHEK	skin
14	chr1:85244800-85246400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:85244800-85246600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr1:85244800-85246600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:85244800-85246600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:85244800-85246600	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells	blood
20	chr1:85244800-85246800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:85245000-85245200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr1:85245000-85245600	Enhancers	Brain Anterior Caudate	brain
23	chr1:85245000-85246200	Enhancers	Brain Hippocampus Middle	brain
24	chr1:85245000-85246200	Enhancers	NHDF-Ad	bronchial
25	chr1:85245000-85246600	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr1:85245000-85246600	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr1:85245000-85247800	Enhancers	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links