Variant report

Variant	rs55979661
Chromosome Location	chr5:105259869-105259870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12521600	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13153178	0.81[ASN][1000 genomes]
rs1404169	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1482914	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1842858	0.82[ASN][1000 genomes]
rs4254875	0.82[ASN][1000 genomes]
rs59811680	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62378691	0.84[ASN][1000 genomes]
rs72781251	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72781254	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs900412	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030414	chr5:104583231-105392990	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv537847	chr5:104583231-105392990	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1032927	chr5:104707298-105323885	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv537848	chr5:104707298-105323885	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv830436	chr5:105192270-105403753	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:105258200-105268200	Weak transcription	NHLF	lung
2	chr5:105258600-105260200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr5:105259400-105261600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:105259400-105261600	Enhancers	NHDF-Ad	bronchial
5	chr5:105259600-105260400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:105259600-105261000	Enhancers	HSMM	muscle
7	chr5:105259600-105261600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:105259600-105261800	Enhancers	Osteobl	bone
9	chr5:105259800-105261600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:105259800-105261600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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