Variant report

Variant	rs559803107
Chromosome Location	chr5:119951332-119951333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830463	chr5:119806643-119968825	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1031453	chr5:119843593-120393038	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv948613	chr5:119861955-119999008	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv599602	chr5:119866504-120023393	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv949499	chr5:119869763-119999008	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv830464	chr5:119950090-120106717	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119942600-119952800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:119948200-119952000	Enhancers	Osteobl	bone
3	chr5:119948600-119952000	Enhancers	HSMM	muscle
4	chr5:119949200-119953000	Enhancers	NHLF	lung
5	chr5:119949400-119951800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:119949400-119952400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:119949400-119953000	Enhancers	HMEC	breast
8	chr5:119949400-119953000	Enhancers	NHEK	skin
9	chr5:119949600-119952000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:119949800-119951600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr5:119949800-119953000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:119950000-119951400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:119950600-119951600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:119950600-119951600	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:119950600-119951600	Enhancers	NHDF-Ad	bronchial
16	chr5:119950600-119951800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:119950600-119952000	Weak transcription	Aorta	Aorta
18	chr5:119950600-119953000	Enhancers	HSMMtube	muscle
19	chr5:119950600-119954600	Weak transcription	Fetal Lung	lung
20	chr5:119950600-119967400	Weak transcription	Psoas Muscle	Psoas
21	chr5:119950800-119951600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:119950800-119951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:119950800-119951800	Weak transcription	Brain Germinal Matrix	brain
24	chr5:119950800-119953000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:119950800-119953000	Enhancers	NH-A	brain
26	chr5:119951000-119951400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:119951000-119951600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:119951000-119951600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:119951000-119954400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr5:119951200-119951600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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