Variant report

Variant	rs559808510
Chromosome Location	chr18:9622288-9622289
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9612628..9617891-chr18:9619605..9623342,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154845	Chromatin interaction
ENSG00000263627	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv458024	chr18:9558240-9828448	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	nsv576448	chr18:9558240-9828448	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
4	nsv521175	chr18:9615851-9623052	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv3373435	chr18:9620977-9623525	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	esv2470365	chr18:9621431-9623058	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv2200835	chr18:9621764-9622370	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv3428113	chr18:9621774-9622413	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3373998	chr18:9621825-9622345	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	esv3316479	chr18:9621827-9622354	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	esv3491892	chr18:9621839-9622307	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	esv3491893	chr18:9621839-9622307	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
13	esv3316478	chr18:9621847-9622329	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
14	esv3316477	chr18:9621862-9622302	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
15	esv3316480	chr18:9621884-9622303	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
16	esv3326370	chr18:9621902-9622316	Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9615800-9625200	Weak transcription	Placenta	Placenta
2	chr18:9615800-9625400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr18:9615800-9627400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr18:9617400-9625400	Weak transcription	HMEC	breast
5	chr18:9617600-9630600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr18:9619800-9627400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:9620000-9625400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr18:9620000-9625600	Weak transcription	Hela-S3	cervix
9	chr18:9620000-9627200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr18:9620000-9627400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr18:9620000-9627600	Weak transcription	NHDF-Ad	bronchial
12	chr18:9620200-9623800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr18:9620200-9625200	Weak transcription	NHEK	skin
14	chr18:9620200-9625400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr18:9620200-9625600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr18:9620200-9627000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr18:9620200-9627400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr18:9620200-9627400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr18:9620200-9627400	Weak transcription	NHLF	lung
20	chr18:9620200-9627400	Weak transcription	Osteobl	bone
21	chr18:9620800-9627600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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