Variant report

Variant	rs55982202
Chromosome Location	chr4:119933026-119933027
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56167564	1.00[AMR][1000 genomes]
rs56231990	1.00[AMR][1000 genomes]
rs72669479	1.00[AMR][1000 genomes]
rs72671672	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916641	chr4:119780023-120777320	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv948802	chr4:119844269-120208926	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:119922400-119933200	Weak transcription	Psoas Muscle	Psoas
2	chr4:119930800-119933800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:119931600-119933200	Enhancers	Adipose Nuclei	Adipose
4	chr4:119931600-119943000	Weak transcription	Aorta	Aorta
5	chr4:119932200-119933400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:119932600-119936000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:119932600-119937200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr4:119932600-119937400	Weak transcription	Ovary	ovary
9	chr4:119932600-119938000	Weak transcription	Fetal Stomach	stomach
10	chr4:119932600-119946000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:119932600-119947800	Weak transcription	Right Ventricle	heart
12	chr4:119932800-119933200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr4:119932800-119934200	Weak transcription	Colon Smooth Muscle	Colon
14	chr4:119932800-119936000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr4:119932800-119937600	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr4:119932800-119941200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:119933000-119933200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr4:119933000-119933400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr4:119933000-119937800	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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