Variant report

Variant	rs55982582
Chromosome Location	chr19:18790592-18790593
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:18789026..18790711-chr19:18810926..18813520,2	K562	blood:
2	chr19:18787745..18791720-chr19:18792743..18796272,4	MCF-7	breast:
3	chr19:18788915..18790701-chr19:18792905..18794512,2	K562	blood:
4	chr19:18681468..18683110-chr19:18789281..18791486,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105662	Chromatin interaction
ENSG00000221983	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55728087	1.00[AMR][1000 genomes]
rs55733002	1.00[AMR][1000 genomes]
rs55863188	1.00[AMR][1000 genomes]
rs55963536	1.00[AMR][1000 genomes]
rs56774113	1.00[AMR][1000 genomes]
rs73923132	1.00[AMR][1000 genomes]
rs73923133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057795	chr19:18453362-18883844	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv543925	chr19:18453362-18883844	Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv532615	chr19:18534867-18796031	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv911282	chr19:18624964-18928480	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
5	nsv911286	chr19:18652844-18811112	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv911289	chr19:18700047-18811112	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:18760400-18794800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr19:18770400-18793600	Weak transcription	GM12878-XiMat	blood
3	chr19:18775200-18793800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr19:18777800-18793800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr19:18780200-18793400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr19:18780200-18793800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr19:18780400-18793800	Weak transcription	Right Ventricle	heart
8	chr19:18780800-18793800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:18780800-18793800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr19:18781000-18793800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr19:18782200-18793600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr19:18782800-18793800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr19:18783200-18793800	Weak transcription	Spleen	Spleen
14	chr19:18783400-18793000	Weak transcription	Dnd41	blood
15	chr19:18783400-18793600	Weak transcription	Primary T cells from cord blood	blood
16	chr19:18783400-18793600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr19:18785800-18793800	Weak transcription	Brain Angular Gyrus	brain
18	chr19:18785800-18793800	Weak transcription	Fetal Heart	heart
19	chr19:18788000-18791000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr19:18788000-18791000	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr19:18789200-18793800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr19:18789200-18793800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr19:18789200-18793800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr19:18789400-18793000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr19:18789400-18793000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr19:18789400-18793000	Weak transcription	HepG2	liver
27	chr19:18789400-18793200	Weak transcription	K562	blood
28	chr19:18789400-18793400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr19:18789400-18793600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr19:18789400-18793600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr19:18789400-18793600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr19:18789400-18793600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr19:18789400-18793600	Weak transcription	Stomach Mucosa	stomach
34	chr19:18789400-18793600	Weak transcription	NHLF	lung
35	chr19:18789400-18793800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr19:18789400-18793800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr19:18789400-18793800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr19:18789400-18793800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr19:18789400-18793800	Weak transcription	Liver	Liver
40	chr19:18789400-18793800	Weak transcription	Brain Substantia Nigra	brain
41	chr19:18789400-18793800	Weak transcription	Esophagus	oesophagus
42	chr19:18789400-18793800	Weak transcription	Fetal Lung	lung
43	chr19:18789400-18793800	Weak transcription	NH-A	brain
44	chr19:18789600-18791000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr19:18789600-18791000	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr19:18789600-18792800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr19:18789600-18793000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr19:18789600-18793200	Weak transcription	Placenta	Placenta
49	chr19:18789600-18793400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr19:18789600-18793400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links