Variant report

Variant	rs559845017
Chromosome Location	chr5:41411964-41411965
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3342106	chr5:41411195-41413093	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1936194	chr5:41411781-41412226	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3333455	chr5:41411843-41412138	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv3521226	chr5:41411852-41412119	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3521227	chr5:41411852-41412119	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3378120	chr5:41411887-41412079	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3365482	chr5:41411897-41412112	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3364504	chr5:41411927-41412120	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv327751	chr5:41411931-41412014	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3427477	chr5:41411947-41412089	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3471655	chr5:41411947-41412091	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv3471656	chr5:41411947-41412091	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41404000-41412000	Enhancers	Fetal Heart	heart
2	chr5:41409400-41412600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:41409600-41412600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:41409600-41412600	Weak transcription	Ovary	ovary
5	chr5:41409600-41412800	Weak transcription	Hela-S3	cervix
6	chr5:41409600-41413800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:41409600-41414400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:41409600-41414400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:41409600-41414400	Weak transcription	HMEC	breast
10	chr5:41409600-41414400	Weak transcription	NH-A	brain
11	chr5:41409600-41414600	Weak transcription	HSMM	muscle
12	chr5:41409800-41412600	Weak transcription	Fetal Intestine Large	intestine
13	chr5:41409800-41412600	Weak transcription	NHDF-Ad	bronchial
14	chr5:41409800-41412800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:41409800-41414400	Weak transcription	Osteobl	bone
16	chr5:41409800-41418400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:41410000-41412600	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:41410000-41412800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:41410000-41413000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:41410000-41417800	Weak transcription	NHLF	lung
21	chr5:41411000-41413200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr5:41411200-41412600	Weak transcription	Right Atrium	heart
23	chr5:41411200-41416400	Weak transcription	Left Ventricle	heart
24	chr5:41411600-41412200	Weak transcription	A549	lung

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