Variant report
| Variant | rs55985427 |
|---|---|
| Chromosome Location | chr13:92984997-92984998 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr13:92982264..92985131-chr13:93004741..93006675,2 | K562 | blood: | |
| 2 | chr13:92983817..92985368-chr13:93015068..93017856,2 | K562 | blood: | |
| 3 | chr13:92984785..92987410-chr13:92992278..92995322,3 | K562 | blood: | |
| 4 | chr13:92983145..92985904-chr13:92987086..92990641,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000232885 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs16947367 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16947368 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16947422 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56275641 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74107220 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74110208 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74110210 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74110212 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8001750 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2756005 | chr13:92584199-93080799 | Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | esv2753357 | chr13:92903199-93026399 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1036835 | chr13:92953101-93039812 | Enhancers ZNF genes & repeats Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1050788 | chr13:92953101-93045491 | Enhancers Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1051394 | chr13:92959102-93049128 | Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv1037815 | chr13:92959102-93052008 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv456068 | chr13:92961151-93038913 | Enhancers Weak transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 8 | nsv562727 | chr13:92961151-93038913 | Weak transcription Enhancers Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
