Variant report

Variant	rs559881810
Chromosome Location	chr11:105884306-105884307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:105880605..105882322-chr11:105882782..105885279,2	K562	blood:
2	chr11:105884249..105887015-chr11:105888601..105891455,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527285	chr11:105884085-105891599	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv526898	chr11:105884085-105893494	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105864000-105891600	Weak transcription	Colonic Mucosa	Colon
2	chr11:105865000-105890400	Weak transcription	A549	lung
3	chr11:105865200-105891600	Weak transcription	Hela-S3	cervix
4	chr11:105871000-105892200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:105877000-105884400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:105877200-105886800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr11:105877600-105892400	Weak transcription	Spleen	Spleen
8	chr11:105877800-105892400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:105878600-105892400	Weak transcription	Stomach Mucosa	stomach
10	chr11:105880600-105891600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:105880800-105884600	Weak transcription	HepG2	liver
12	chr11:105880800-105888600	Weak transcription	Right Ventricle	heart
13	chr11:105880800-105891600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:105880800-105892400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:105881400-105885600	Enhancers	Brain Substantia Nigra	brain
16	chr11:105881400-105887000	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:105881400-105892000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr11:105881600-105884400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:105881600-105884400	Enhancers	Brain Anterior Caudate	brain
20	chr11:105881600-105885000	Weak transcription	Fetal Brain Male	brain
21	chr11:105881600-105887000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:105881600-105887000	Weak transcription	Small Intestine	intestine
23	chr11:105881600-105888200	Enhancers	Brain Hippocampus Middle	brain
24	chr11:105881600-105889800	Weak transcription	NHEK	skin
25	chr11:105881600-105890200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:105881600-105890200	Weak transcription	Fetal Kidney	kidney
27	chr11:105881600-105890200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr11:105881600-105890800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:105881600-105891600	Weak transcription	Fetal Intestine Large	intestine
30	chr11:105881600-105891800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:105881600-105892000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:105881800-105884600	Weak transcription	Liver	Liver
33	chr11:105881800-105886200	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr11:105881800-105887000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:105881800-105888600	Weak transcription	HMEC	breast
36	chr11:105881800-105889200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr11:105881800-105889200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:105881800-105891600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:105881800-105891800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr11:105881800-105892000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr11:105882000-105886000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:105882000-105891800	Weak transcription	Primary B cells from cord blood	blood
43	chr11:105882000-105891800	Weak transcription	Thymus	Thymus
44	chr11:105882000-105892000	Weak transcription	Aorta	Aorta
45	chr11:105882200-105884800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:105882200-105885400	Weak transcription	Fetal Lung	lung
47	chr11:105882200-105886600	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr11:105882200-105887000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:105882200-105887600	Weak transcription	Fetal Stomach	stomach
50	chr11:105882200-105889800	Weak transcription	Right Atrium	heart

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