Variant report

Variant	rs559888214
Chromosome Location	chr16:73067695-73067696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:73029969..73032717-chr16:73066881..73070752,3	MCF-7	breast:
2	chr16:73061047..73064506-chr16:73066434..73068183,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906898	chr16:73017684-73128146	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv827730	chr16:73066699-73115642	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	esv3404606	chr16:73067051-73068099	Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:73049400-73069200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr16:73055200-73076400	Weak transcription	Brain Angular Gyrus	brain
3	chr16:73059000-73072000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr16:73059400-73076400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:73059600-73069800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr16:73059800-73069600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr16:73059800-73070000	Weak transcription	Colonic Mucosa	Colon
8	chr16:73060000-73067800	Weak transcription	Brain Substantia Nigra	brain
9	chr16:73060600-73072600	Enhancers	Fetal Lung	lung
10	chr16:73061200-73070000	Enhancers	Placenta	Placenta
11	chr16:73062400-73071800	Weak transcription	Spleen	Spleen
12	chr16:73062600-73068200	Weak transcription	Right Ventricle	heart
13	chr16:73062800-73069800	Weak transcription	Stomach Mucosa	stomach
14	chr16:73063200-73070200	Weak transcription	Esophagus	oesophagus
15	chr16:73063200-73073800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr16:73063800-73068400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr16:73064600-73068200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr16:73064600-73070000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr16:73064600-73074400	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr16:73064800-73069200	Enhancers	Brain Anterior Caudate	brain
21	chr16:73064800-73069800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr16:73065200-73068000	Enhancers	Colon Smooth Muscle	Colon
23	chr16:73065200-73068600	Enhancers	Fetal Kidney	kidney
24	chr16:73065200-73069800	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr16:73065200-73070200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr16:73065200-73072400	Enhancers	Fetal Muscle Leg	muscle
27	chr16:73065200-73072600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr16:73065200-73074000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr16:73065400-73068800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr16:73065400-73069200	Enhancers	Fetal Stomach	stomach
31	chr16:73065600-73069000	Enhancers	Cortex derived primary cultured neurospheres	brain
32	chr16:73065800-73068000	Enhancers	NHDF-Ad	bronchial
33	chr16:73065800-73068600	Enhancers	Primary B cells from peripheral blood	blood
34	chr16:73065800-73068600	Enhancers	Fetal Heart	heart
35	chr16:73065800-73069800	Weak transcription	Duodenum Mucosa	Duodenum
36	chr16:73066000-73068800	Enhancers	HSMMtube	muscle
37	chr16:73066000-73069600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr16:73066200-73067800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr16:73066200-73068600	Enhancers	Fetal Intestine Large	intestine
40	chr16:73066200-73070200	Enhancers	Primary hematopoietic stem cells	blood
41	chr16:73066400-73068200	Bivalent Enhancer	Fetal Thymus	thymus
42	chr16:73066400-73068600	Enhancers	Muscle Satellite Cultured Cells	--
43	chr16:73066600-73067800	Enhancers	Rectal Smooth Muscle	rectum
44	chr16:73066600-73068400	Enhancers	A549	lung
45	chr16:73066600-73068400	Enhancers	Hela-S3	cervix
46	chr16:73066600-73068800	Enhancers	Adipose Nuclei	Adipose
47	chr16:73066600-73069600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr16:73066800-73068400	Genic enhancers	Fetal Intestine Small	intestine
49	chr16:73066800-73068800	Enhancers	Lung	lung
50	chr16:73066800-73068800	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links