Variant report

Variant	rs559888836
Chromosome Location	chr7:16794670-16794671
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:16792720..16796708-chr7:16843218..16846000,6	MCF-7	breast:
2	chr7:16685517..16687243-chr7:16793230..16795207,2	K562	blood:
3	chr7:16793468..16795066-chr7:16813077..16814664,2	MCF-7	breast:
4	chr15:52263919..52265515-chr7:16793247..16794965,2	MCF-7	breast:
5	chr7:16793269..16796429-chr7:16820580..16823340,4	MCF-7	breast:
6	chr7:16793915..16797924-chr7:16812688..16815916,4	K562	blood:
7	chr7:16460318..16462710-chr7:16792580..16794734,3	K562	blood:
8	chr7:16735197..16737056-chr7:16793469..16795532,2	MCF-7	breast:
9	chr7:16776351..16778265-chr7:16793377..16796196,2	K562	blood:
10	chr7:16781689..16783887-chr7:16794531..16797330,3	K562	blood:
11	chr7:16785410..16787895-chr7:16793449..16795182,2	MCF-7	breast:
12	chr7:16793297..16794819-chr7:16840473..16842534,2	MCF-7	breast:
13	chr7:16685077..16688645-chr7:16790567..16794834,4	K562	blood:
14	chr7:16793190..16795518-chr7:16923523..16926249,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000106541	Chromatin interaction
ENSG00000136261	Chromatin interaction
ENSG00000214960	Chromatin interaction
ENSG00000106524	Chromatin interaction
ENSG00000166477	Chromatin interaction
ENSG00000106537	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv824019	chr7:16794489-16800589	Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv3475740	chr7:16794549-16800628	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3475741	chr7:16794549-16800658	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv3475739	chr7:16794552-16800658	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16792800-16794800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:16792800-16794800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:16792800-16794800	Active TSS	Duodenum Mucosa	Duodenum
4	chr7:16792800-16794800	Active TSS	Fetal Kidney	kidney
5	chr7:16792800-16795000	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr7:16792800-16795000	Active TSS	Brain Angular Gyrus	brain
7	chr7:16792800-16795000	Active TSS	Fetal Brain Male	brain
8	chr7:16792800-16795200	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr7:16792800-16795400	Active TSS	Right Atrium	heart
10	chr7:16792800-16795600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr7:16792800-16796200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:16792800-16796400	Active TSS	Fetal Intestine Small	intestine
13	chr7:16792800-16796600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:16792800-16796600	Active TSS	Fetal Brain Female	brain
15	chr7:16793000-16794800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr7:16793000-16794800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:16793000-16794800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:16793000-16794800	Active TSS	Esophagus	oesophagus
19	chr7:16793000-16794800	Active TSS	Rectal Mucosa Donor 31	rectum
20	chr7:16793000-16794800	Active TSS	NHLF	lung
21	chr7:16793000-16795000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:16793000-16795000	Active TSS	Colonic Mucosa	Colon
23	chr7:16793000-16795000	Active TSS	Duodenum Smooth Muscle	Duodenum
24	chr7:16793000-16795000	Active TSS	Fetal Lung	lung
25	chr7:16793000-16795000	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
26	chr7:16793000-16795000	Active TSS	Pancreas	Pancrea
27	chr7:16793000-16795000	Active TSS	Rectal Smooth Muscle	rectum
28	chr7:16793000-16795000	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr7:16793000-16795000	Active TSS	Stomach Mucosa	stomach
30	chr7:16793000-16795000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
31	chr7:16793000-16795200	Active TSS	Brain Anterior Caudate	brain
32	chr7:16793000-16795400	Active TSS	Right Ventricle	heart
33	chr7:16793000-16795600	Active TSS	Fetal Intestine Large	intestine
34	chr7:16793000-16796000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:16793000-16796800	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr7:16793200-16794800	Active TSS	Gastric	stomach
37	chr7:16793200-16794800	Active TSS	Left Ventricle	heart
38	chr7:16793600-16794800	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:16793600-16795000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
40	chr7:16793800-16795000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:16794000-16794800	Flanking Active TSS	HMEC	breast
42	chr7:16794000-16794800	Flanking Active TSS	HUVEC	blood vessel
43	chr7:16794000-16795000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr7:16794000-16795000	Flanking Active TSS	NHEK	skin
45	chr7:16794000-16795200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:16794200-16794800	Flanking Active TSS	Placenta	Placenta
47	chr7:16794200-16794800	Flanking Active TSS	A549	lung
48	chr7:16794200-16794800	Flanking Bivalent TSS/Enh	HepG2	liver
49	chr7:16794200-16794800	Flanking Active TSS	Osteobl	bone
50	chr7:16794200-16795000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links