Variant report

Variant	rs55990237
Chromosome Location	chr2:183371294-183371295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3460937	chr2:183370439-183372447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
5	esv3460938	chr2:183370439-183372447	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3435176	chr2:183370513-183372162	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	nsv821839	chr2:183370578-183372061	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	nsv821840	chr2:183370578-183372588	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv821841	chr2:183370796-183372061	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183361600-183392000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:183365600-183371400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr2:183367800-183373800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:183368000-183371600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:183368200-183372800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr2:183368400-183371400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr2:183369600-183372000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:183370200-183371400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:183370200-183371400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:183370200-183371400	Weak transcription	Brain Hippocampus Middle	brain
11	chr2:183370200-183371400	Weak transcription	NHLF	lung
12	chr2:183370400-183371400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr2:183370800-183371600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:183371200-183371800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:183371200-183371800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr2:183371200-183371800	Enhancers	Osteobl	bone
17	chr2:183371200-183372000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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