Variant report

Variant	rs559904
Chromosome Location	chr12:121029354-121029355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10774556	0.88[ASN][1000 genomes]
rs1167698	0.86[ASN][1000 genomes]
rs1167711	0.89[ASN][1000 genomes]
rs1167712	0.86[ASN][1000 genomes]
rs1167718	0.83[ASN][1000 genomes]
rs1184538	0.81[ASN][1000 genomes]
rs2292681	0.87[ASN][1000 genomes]
rs4767909	0.83[ASN][1000 genomes]
rs608724	0.91[ASN][1000 genomes]
rs636737	0.92[ASN][1000 genomes]
rs7138112	0.88[ASN][1000 genomes]
rs73405639	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73405641	0.82[EUR][1000 genomes]
rs755549	0.86[ASN][1000 genomes]
rs787947	0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs559904	POP5	Cis_1M	lymphoblastoid	RTeQTL
rs559904	COQ5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121027200-121029400	Weak transcription	Colonic Mucosa	Colon
2	chr12:121028000-121033200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr12:121028200-121029400	Enhancers	Stomach Mucosa	stomach
4	chr12:121028800-121030000	Enhancers	HepG2	liver
5	chr12:121028800-121030200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr12:121029000-121029600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr12:121029000-121029800	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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