Variant report

Variant	rs559926462
Chromosome Location	chr5:108166788-108166789
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr5:108166517-108166819	K562	blood:	n/a	n/a
2	JUND	chr5:108166462-108166954	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000250383	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv471039	chr5:108133967-108245089	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv1801555	chr5:108166720-108203055	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:108146800-108183600	Weak transcription	Ovary	ovary
2	chr5:108147000-108198800	Weak transcription	Aorta	Aorta
3	chr5:108147000-108208800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:108150400-108171400	Weak transcription	NHDF-Ad	bronchial
5	chr5:108153400-108176400	Weak transcription	NHLF	lung
6	chr5:108154800-108176400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:108156000-108174400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:108156400-108178200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:108160200-108172400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:108164800-108182400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:108165800-108181000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:108165800-108194200	Weak transcription	NHEK	skin
13	chr5:108166000-108166800	Enhancers	Right Atrium	heart
14	chr5:108166000-108176000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:108166000-108176200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:108166200-108166800	Enhancers	K562	blood
17	chr5:108166400-108166800	Enhancers	Colon Smooth Muscle	Colon
18	chr5:108166400-108166800	Flanking Active TSS	Fetal Heart	heart
19	chr5:108166400-108193600	Weak transcription	Primary B cells from cord blood	blood
20	chr5:108166400-108203200	Weak transcription	HSMM	muscle
21	chr5:108166600-108166800	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr5:108166600-108167000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:108166600-108194600	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr5:108166600-108217000	Weak transcription	Left Ventricle	heart

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