Variant report

Variant	rs559928158
Chromosome Location	chr11:76091103-76091104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr11:76091059-76091205	K562	blood:	n/a	n/a
2	MAX	chr11:76091064-76091909	MCF-7	breast:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
3	MAZ	chr11:76090859-76093234	IMR90	lung:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
4	RUNX3	chr11:76090991-76091626	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:76091086-76091882	H1-neurons	neurons:	n/a	n/a
6	RUNX3	chr11:76091082-76091648	GM12878	blood:	n/a	n/a
7	HCFC1	chr11:76090021-76093194	Hela-S3	cervix:	n/a	n/a
8	CUX1	chr11:76090806-76091313	K562	blood:	n/a	n/a
9	POLR2A	chr11:76091077-76092647	Hela-S3	cervix:	n/a	n/a
10	SIN3A	chr11:76091073-76092795	H1-hESC	embryonic stem cell:	n/a	chr11:76092047-76092060 chr11:76091564-76091577
11	RFX5	chr11:76090956-76091516	Hela-S3	cervix:	n/a	n/a
12	SIN3AK20	chr11:76091017-76091598	H1-hESC	embryonic stem cell:	n/a	n/a
13	MYC	chr11:76091086-76092707	MCF10A-Er-Src	breast:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595
14	POLR2A	chr11:76091080-76092652	GM12878	blood:	n/a	n/a
15	MTA3	chr11:76090947-76091683	GM12878	blood:	n/a	n/a
16	SIN3AK20	chr11:76091050-76092917	MCF-7	breast:	n/a	n/a
17	MXI1	chr11:76090717-76093238	SK-N-SH	brain:	n/a	n/a
18	REST	chr11:76090993-76093222	H1-neurons	neurons:	n/a	chr11:76092047-76092060
19	TBL1XR1	chr11:76090991-76091292	K562	blood:	n/a	n/a
20	MTA3	chr11:76090885-76091524	GM12878	blood:	n/a	n/a
21	POLR2A	chr11:76091021-76093124	HepG2	liver:	n/a	n/a
22	NR2F2	chr11:76090765-76091521	K562	blood:	n/a	n/a
23	CBX3	chr11:76090952-76091674	K562	blood:	n/a	n/a
24	MYC	chr11:76090847-76091587	MCF10A-Er-Src	breast:	n/a	n/a
25	MXI1	chr11:76090920-76093212	IMR90	lung:	n/a	n/a
26	POLR2A	chr11:76091084-76092981	Raji	blood:	n/a	n/a
27	ZKSCAN1	chr11:76090476-76091747	Hela-S3	cervix:	n/a	n/a
28	CTCF	chr11:76090914-76093713	SK-N-SH	brain:	n/a	chr11:76091717-76091730 chr11:76091717-76091726
29	MAX	chr11:76090995-76091772	NB4	blood:	n/a	chr11:76091582-76091597 chr11:76091583-76091594 chr11:76091580-76091595

No.	Distal block	Cell Line	Cell type
1	chr11:76079303..76082514-chr11:76090617..76092781,5	K562	blood:
2	chr11:76089990..76094695-chr11:76100568..76104844,7	MCF-7	breast:
3	chr11:76089758..76095735-chr11:76153234..76157826,15	MCF-7	breast:
4	chr11:76090234..76093573-chr11:76154824..76158196,8	MCF-7	breast:
5	chr11:76090615..76095251-chr11:76152894..76157527,10	K562	blood:
6	chr11:76071533..76073218-chr11:76090981..76092790,2	K562	blood:

Variant related genes	Relation type
ENSG00000179240	TF binding region
ENSG00000255135	Chromatin interaction
ENSG00000137492	Chromatin interaction
ENSG00000271757	Chromatin interaction
ENSG00000158636	Chromatin interaction
ENSG00000272301	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440498	chr11:76090729-76093277	Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76089600-76091200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:76089600-76091200	Flanking Active TSS	Dnd41	blood
3	chr11:76090200-76091200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
4	chr11:76090200-76091200	Flanking Active TSS	Fetal Brain Female	brain
5	chr11:76090200-76091200	Flanking Active TSS	Hela-S3	cervix
6	chr11:76090200-76091400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:76090200-76091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:76090200-76093400	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr11:76090400-76091200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:76090400-76091200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:76090400-76091200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:76090400-76091200	Flanking Active TSS	Fetal Kidney	kidney
14	chr11:76090400-76091200	Enhancers	Spleen	Spleen
15	chr11:76090400-76091200	Flanking Active TSS	NHEK	skin
16	chr11:76090400-76091400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:76090400-76091400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:76090400-76091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:76090400-76091400	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr11:76090400-76091400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr11:76090400-76091400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr11:76090400-76091400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr11:76090400-76091400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:76090400-76091400	Flanking Active TSS	Liver	Liver
25	chr11:76090400-76091400	Flanking Active TSS	Brain Cingulate Gyrus	brain
26	chr11:76090400-76091400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:76090400-76091400	Flanking Active TSS	Duodenum Mucosa	Duodenum
28	chr11:76090400-76091400	Flanking Active TSS	Fetal Brain Male	brain
29	chr11:76090400-76091400	Flanking Active TSS	Psoas Muscle	Psoas
30	chr11:76090400-76091400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr11:76090400-76091400	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr11:76090400-76091400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr11:76090400-76092800	Active TSS	H1 Cell Line	embryonic stem cell
34	chr11:76090400-76093000	Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr11:76090600-76091200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:76090600-76091200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr11:76090600-76091200	Flanking Active TSS	Fetal Lung	lung
38	chr11:76090600-76091200	Flanking Active TSS	NH-A	brain
39	chr11:76090600-76091200	Flanking Active TSS	Osteobl	bone
40	chr11:76090600-76091400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
41	chr11:76090600-76091400	Flanking Active TSS	Brain Substantia Nigra	brain
42	chr11:76090600-76091400	Flanking Active TSS	Rectal Smooth Muscle	rectum
43	chr11:76090600-76091400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr11:76090600-76091400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
45	chr11:76090600-76091400	Flanking Active TSS	Thymus	Thymus
46	chr11:76090600-76091400	Flanking Active TSS	HUVEC	blood vessel
47	chr11:76090600-76091600	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr11:76090600-76091600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr11:76090600-76091600	Flanking Active TSS	Adipose Nuclei	Adipose
50	chr11:76090600-76091600	Active TSS	Right Atrium	heart

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