Variant report

Variant	rs55993014
Chromosome Location	chr21:28079921-28079922
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12626187	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12627713	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs56306036	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7275254	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7282368	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459223	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv587337	chr21:28070037-28092531	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:28078400-28081400	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr21:28078600-28081600	Enhancers	Dnd41	blood
3	chr21:28079600-28080000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:28079600-28080000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr21:28079600-28080800	Enhancers	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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