Variant report

Variant	rs559930979
Chromosome Location	chr3:159886811-159886812
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:159886540..159889078-chr3:159894126..159895678,2	K562	blood:
2	chr3:159880105..159882263-chr3:159886803..159888611,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv877699	chr3:159820488-159976271	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
5	esv3385188	chr3:159886158-159889956	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159881600-159887600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:159881800-159887200	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:159885800-159887000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:159886000-159887200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr3:159886000-159887200	Enhancers	Fetal Kidney	kidney
6	chr3:159886000-159887400	Enhancers	A549	lung
7	chr3:159886000-159890400	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:159886200-159887800	Enhancers	NHLF	lung
9	chr3:159886200-159888000	Enhancers	Osteobl	bone
10	chr3:159886200-159888200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:159886400-159887200	Enhancers	NH-A	brain
12	chr3:159886400-159887800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr3:159886400-159889200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:159886600-159887200	Enhancers	Fetal Intestine Small	intestine
15	chr3:159886600-159887400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:159886600-159887400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:159886600-159887600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:159886600-159887600	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:159886600-159887600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:159886600-159887800	Enhancers	Primary hematopoietic stem cells	blood
21	chr3:159886600-159887800	Enhancers	K562	blood
22	chr3:159886600-159887800	Enhancers	NHDF-Ad	bronchial
23	chr3:159886600-159888200	Enhancers	HSMMtube	muscle
24	chr3:159886800-159887200	Enhancers	HSMM	muscle
25	chr3:159886800-159887400	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr3:159886800-159887400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:159886800-159887600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr3:159886800-159887600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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