Variant report

Variant	rs559946080
Chromosome Location	chr13:98077336-98077337
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv1791802	chr13:98076911-98096882	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1804050	chr13:98076911-98096882	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1794802	chr13:98076911-98106042	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1797132	chr13:98076911-98106042	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:98075800-98077800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:98076000-98081800	Weak transcription	HSMM	muscle
3	chr13:98076400-98077400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr13:98076400-98078000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:98076400-98081200	Weak transcription	Brain Angular Gyrus	brain
6	chr13:98076400-98081600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr13:98076400-98081600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:98076400-98081600	Weak transcription	Brain Substantia Nigra	brain
9	chr13:98076400-98081800	Weak transcription	Fetal Heart	heart
10	chr13:98076400-98081800	Weak transcription	Psoas Muscle	Psoas
11	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr13:98076400-98081800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:98076400-98081800	Weak transcription	NHDF-Ad	bronchial
14	chr13:98076400-98081800	Weak transcription	Osteobl	bone
15	chr13:98076400-98084800	Weak transcription	Esophagus	oesophagus
16	chr13:98076600-98081000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr13:98076600-98081800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr13:98077200-98078800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr13:98077200-98081600	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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