Variant report

Variant	rs55994869
Chromosome Location	chr4:16379640-16379641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10489058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489061	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11929826	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11936323	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17487141	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17487543	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17495284	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17496667	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17559779	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34487320	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4479699	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55990784	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55993741	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6846543	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs972637	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1004821	chr4:16055996-16830629	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537046	chr4:16055996-16830629	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1006449	chr4:16338191-16412544	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428755	chr4:16366311-16528135	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:16379400-16380000	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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