Variant report

Variant	rs55994925
Chromosome Location	chr14:38337735-38337736
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17107250	0.80[AFR][1000 genomes]
rs17107258	1.00[EUR][1000 genomes]
rs56299317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8014372	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916985	chr14:38052347-38838551	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1051120	chr14:38294270-38436127	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv542046	chr14:38294270-38436127	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv564386	chr14:38311855-38365605	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:38332400-38343600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:38334800-38338200	Weak transcription	Adipose Nuclei	Adipose
3	chr14:38334800-38338800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:38334800-38340000	Weak transcription	A549	lung
5	chr14:38334800-38343800	Weak transcription	Esophagus	oesophagus
6	chr14:38335000-38338200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:38335000-38338200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:38335000-38338200	Weak transcription	NHEK	skin
9	chr14:38335000-38339800	Weak transcription	Fetal Stomach	stomach
10	chr14:38335000-38343800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr14:38335000-38343800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:38335600-38338400	Weak transcription	Liver	Liver
13	chr14:38335600-38338600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:38335600-38339200	Weak transcription	Colon Smooth Muscle	Colon
15	chr14:38335600-38343600	Weak transcription	Gastric	stomach
16	chr14:38335800-38341600	Enhancers	HepG2	liver
17	chr14:38336200-38343600	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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