Variant report

Variant	rs559951247
Chromosome Location	chr20:53292962-53292963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:53291044..53293305-chr20:53298818..53301470,2	MCF-7	breast:
2	chr16:70414219..70416297-chr20:53291360..53294038,2	MCF-7	breast:
3	chr20:53291637..53293579-chr3:170973447..170976277,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067497	chr20:53146241-53751820	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
2	nsv1064144	chr20:53175264-53750137	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv544302	chr20:53175264-53750137	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv1060552	chr20:53234716-53655115	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
5	nsv586283	chr20:53288595-53311415	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
6	esv17576	chr20:53289505-53294132	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3400827	chr20:53291970-53293993	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv8992	chr20:53292398-53293226	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3403698	chr20:53292445-53293493	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3454359	chr20:53292537-53293071	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3495039	chr20:53292557-53293060	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3495044	chr20:53292557-53293100	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3495043	chr20:53292577-53293020	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3495042	chr20:53292579-53293002	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3454360	chr20:53292593-53293037	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3495046	chr20:53292595-53293018	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3454361	chr20:53292599-53292993	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3454363	chr20:53292607-53293034	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3495041	chr20:53292615-53293015	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3572	chr20:53292617-53293099	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3454362	chr20:53292637-53292971	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3495045	chr20:53292648-53292982	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv180171	chr20:53292652-53292965	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3454365	chr20:53292652-53292980	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv3495047	chr20:53292652-53292980	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	esv1007848	chr20:53292657-53292970	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
27	esv1280038	chr20:53292665-53292979	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:53290600-53296800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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