Variant report

Variant	rs559958003
Chromosome Location	chr11:65636705-65636706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:73)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:73 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr11:65635961-65637898	A549	lung:	n/a	n/a
2	PBX3	chr11:65635896-65636742	A549	lung:	n/a	n/a
3	POLR2A	chr11:65631446-65639140	PANC-1	pancreas:	n/a	n/a
4	POLR2A	chr11:65636342-65636740	GM12878	blood:	n/a	n/a
5	POLR2A	chr11:65636346-65639953	H1-neurons	neurons:	n/a	n/a
6	POLR2A	chr11:65635676-65637441	GM12878	blood:	n/a	n/a
7	POLR2A	chr11:65635317-65638162	Hela-S3	cervix:	n/a	n/a
8	BCL3	chr11:65636004-65637388	A549	lung:	n/a	n/a
9	POLR2A	chr11:65635334-65636746	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr11:65635801-65638012	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr11:65636308-65636708	ECC-1	luminal epithelium:	n/a	n/a
12	POLR2A	chr11:65616755-65639999	U87	brain:	n/a	n/a
13	POLR2A	chr11:65636486-65637160	K562	blood:	n/a	n/a
14	POLR2A	chr11:65633884-65638264	HUVEC	blood vessel:	n/a	n/a
15	POLR2A	chr11:65634852-65637658	GM12891	blood:	n/a	n/a
16	POLR2A	chr11:65633594-65637483	GM12878	blood:	n/a	n/a
17	POLR2A	chr11:65635729-65637342	PBDE	blood:	n/a	n/a
18	POLR2A	chr11:65633508-65637789	SK-N-MC	brain:	n/a	n/a
19	NFATC1	chr11:65635290-65637674	GM12878	blood:	n/a	n/a
20	POLR2A	chr11:65636063-65636881	HepG2	liver:	n/a	n/a
21	POLR2A	chr11:65635362-65638657	GM12878	blood:	n/a	n/a
22	POLR2A	chr11:65635033-65636746	K562	blood:	n/a	n/a
23	POLR2A	chr11:65636120-65638634	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr11:65633724-65638544	PANC-1	pancreas:	n/a	n/a
25	POLR2A	chr11:65634816-65638944	GM12891	blood:	n/a	n/a
26	POLR2A	chr11:65635498-65638874	U87	brain:	n/a	n/a
27	STAT5A	chr11:65635786-65638655	GM12878	blood:	n/a	chr11:65637546-65637558 chr11:65638400-65638407
28	POLR2A	chr11:65633881-65638811	GM12892	blood:	n/a	n/a
29	MTA3	chr11:65635445-65638693	GM12878	blood:	n/a	n/a
30	POLR2A	chr11:65616706-65640269	U87	brain:	n/a	n/a
31	POLR2A	chr11:65634951-65638207	K562	blood:	n/a	n/a
32	POLR2A	chr11:65636430-65636706	HepG2	liver:	n/a	n/a
33	POLR2A	chr11:65634139-65637525	PFSK-1	brain:	n/a	n/a
34	POLR2A	chr11:65633895-65636834	K562	blood:	n/a	n/a
35	POLR2A	chr11:65635153-65637940	HUVEC	blood vessel:	n/a	n/a
36	POLR2A	chr11:65632391-65638275	HUVEC	blood vessel:	n/a	n/a
37	POLR2A	chr11:65634890-65636708	H1-hESC	embryonic stem cell:	n/a	n/a
38	POLR2A	chr11:65636141-65637273	GM12891	blood:	n/a	n/a
39	POLR2A	chr11:65636256-65638632	MCF10A-Er-Src	breast:	n/a	n/a
40	NFATC1	chr11:65635820-65638736	GM12878	blood:	n/a	n/a
41	POLR2A	chr11:65636368-65636732	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr11:65633886-65639510	K562	blood:	n/a	n/a
43	POLR2A	chr11:65635516-65637481	MCF-7	breast:	n/a	n/a
44	BCL3	chr11:65636365-65636726	GM12878	blood:	n/a	n/a
45	POLR2A	chr11:65636450-65636758	GM12878	blood:	n/a	n/a
46	PML	chr11:65636214-65636710	K562	blood:	n/a	n/a
47	POLR2A	chr11:65634161-65638575	HL-60	blood:	n/a	n/a
48	POLR2A	chr11:65635498-65638868	U87	brain:	n/a	n/a
49	POLR2A	chr11:65636450-65636760	HCT-116	colon:	n/a	n/a
50	POLR2A	chr11:65634734-65637102	K562	blood:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65485320..65488202-chr11:65635523..65638035,2	K562	blood:
2	chr11:65477979..65480813-chr11:65636240..65639820,3	K562	blood:
3	chr11:65485320..65487599-chr11:65635523..65637223,2	K562	blood:
4	chr11:65382643..65384929-chr11:65635582..65638350,2	K562	blood:
5	chr11:65636578..65639381-chr11:65766938..65769474,2	MCF-7	breast:
6	chr11:65402996..65404560-chr11:65635320..65637558,2	K562	blood:
7	chr11:65635925..65638559-chr11:65769134..65770863,2	MCF-7	breast:

No data

Variant related genes	Relation type
EFEMP2	TF binding region
ENSG00000197136	Chromatin interaction
ENSG00000172977	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000266041	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000172922	Chromatin interaction
ENSG00000173327	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897736	chr11:65335705-65676516	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
2	nsv430401	chr11:65419324-65788024	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	224 gene(s)	inside rSNPs	diseases
3	esv2758274	chr11:65559893-65722363	Genic enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
4	esv2759834	chr11:65559893-65722363	Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
5	nsv427890	chr11:65559893-65722363	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv897761	chr11:65580638-65738566	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	186 gene(s)	inside rSNPs	diseases
7	nsv555215	chr11:65581579-65676516	Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
8	nsv897762	chr11:65613218-65758854	Active TSS Flanking Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	185 gene(s)	inside rSNPs	diseases
9	nsv897763	chr11:65613348-65644027	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	121 gene(s)	inside rSNPs	diseases
10	nsv897764	chr11:65613348-65695222	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
11	nsv897765	chr11:65623708-65758854	Strong transcription Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
12	nsv897766	chr11:65624025-65644027	Transcr. at gene 5' and 3' Genic enhancers Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
13	nsv832191	chr11:65632329-65806120	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
14	esv999644	chr11:65636167-65646034	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65628800-65639600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:65629000-65639600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:65629400-65638600	Weak transcription	Right Atrium	heart
4	chr11:65629600-65637400	Strong transcription	Ovary	ovary
5	chr11:65629600-65637600	Strong transcription	Placenta Amnion	Placenta Amnion
6	chr11:65629600-65638000	Strong transcription	Fetal Lung	lung
7	chr11:65630000-65637200	Strong transcription	Fetal Intestine Large	intestine
8	chr11:65630000-65637800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:65630000-65637800	Strong transcription	Muscle Satellite Cultured Cells	--
10	chr11:65630000-65637800	Strong transcription	Osteobl	bone
11	chr11:65630000-65638200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr11:65630000-65638400	Strong transcription	Fetal Intestine Small	intestine
13	chr11:65630200-65637600	Strong transcription	HSMMtube	muscle
14	chr11:65630400-65637200	Strong transcription	Fetal Muscle Leg	muscle
15	chr11:65630600-65637800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:65630600-65637800	Strong transcription	Skeletal Muscle Male	skeletal muscle
17	chr11:65631000-65637000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:65631000-65637000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:65631000-65637400	Strong transcription	Adipose Nuclei	Adipose
20	chr11:65631000-65637400	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:65631200-65637600	Strong transcription	Right Ventricle	heart
22	chr11:65631200-65638000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:65631600-65637200	Strong transcription	Spleen	Spleen
24	chr11:65631600-65638000	Strong transcription	HSMM	muscle
25	chr11:65632000-65637800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:65632200-65638000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:65632200-65639400	Weak transcription	Fetal Kidney	kidney
28	chr11:65633000-65638200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:65633000-65639400	Weak transcription	Psoas Muscle	Psoas
30	chr11:65633200-65639200	Weak transcription	Stomach Mucosa	stomach
31	chr11:65633400-65638000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:65633400-65638200	Weak transcription	HUVEC	blood vessel
33	chr11:65633400-65640600	Weak transcription	Hela-S3	cervix
34	chr11:65633600-65638000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:65633600-65638000	Weak transcription	GM12878-XiMat	blood
36	chr11:65633600-65638200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr11:65633600-65639400	Weak transcription	Brain Angular Gyrus	brain
38	chr11:65633600-65640400	Weak transcription	HMEC	breast
39	chr11:65633800-65636800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr11:65633800-65637600	Weak transcription	Primary B cells from cord blood	blood
41	chr11:65633800-65639200	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr11:65634200-65638200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:65634400-65637000	Strong transcription	NHDF-Ad	bronchial
44	chr11:65634400-65638200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:65634400-65638800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr11:65634400-65639600	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr11:65634600-65637200	Weak transcription	HepG2	liver
48	chr11:65634800-65638000	Weak transcription	Primary B cells from peripheral blood	blood
49	chr11:65634800-65638200	Weak transcription	Pancreas	Pancrea
50	chr11:65634800-65639200	Weak transcription	Brain Substantia Nigra	brain

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