Variant report

Variant	rs559996085
Chromosome Location	chr9:96383698-96383699
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96338100..96342684-chr9:96381746..96385734,6	MCF-7	breast:
2	chr9:96382620..96384260-chr9:96389901..96392114,2	MCF-7	breast:
3	chr9:96374097..96376355-chr9:96382214..96384351,2	K562	blood:
4	chr9:96381800..96384732-chr9:96385534..96387472,3	MCF-7	breast:
5	chr9:96371713..96374026-chr9:96382749..96385685,2	K562	blood:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040891	chr9:96361529-96397338	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1044461	chr9:96362048-96397338	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv893585	chr9:96363859-96403367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1055035	chr9:96372269-96402747	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv519449	chr9:96382100-96395429	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96352400-96384600	Weak transcription	NHLF	lung
2	chr9:96363200-96392000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr9:96366600-96386600	Weak transcription	Fetal Heart	heart
4	chr9:96372800-96392000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:96373400-96386200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:96373400-96387000	Weak transcription	Fetal Brain Female	brain
7	chr9:96373400-96390000	Weak transcription	Primary B cells from cord blood	blood
8	chr9:96374600-96399800	Weak transcription	K562	blood
9	chr9:96374800-96385400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr9:96375200-96383800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:96375200-96391800	Weak transcription	Colonic Mucosa	Colon
12	chr9:96375400-96385800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr9:96375600-96383800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr9:96375600-96390000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:96375800-96386200	Weak transcription	Dnd41	blood
16	chr9:96375800-96390000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr9:96376200-96393000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:96376400-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:96376600-96390000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:96377200-96389200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr9:96377800-96386600	Weak transcription	Fetal Kidney	kidney
22	chr9:96379400-96385800	Enhancers	Right Atrium	heart
23	chr9:96379600-96390000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:96379600-96390000	Weak transcription	Aorta	Aorta
25	chr9:96379800-96385000	Strong transcription	Fetal Stomach	stomach
26	chr9:96379800-96385600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr9:96379800-96391800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:96380000-96384000	Strong transcription	Primary T cells from cord blood	blood
29	chr9:96380000-96386600	Weak transcription	Fetal Lung	lung
30	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr9:96380400-96386800	Enhancers	Right Ventricle	heart
32	chr9:96380600-96385200	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr9:96380800-96390000	Weak transcription	Thymus	Thymus
34	chr9:96380800-96399800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:96381000-96384000	Enhancers	Psoas Muscle	Psoas
36	chr9:96381000-96384800	Enhancers	Gastric	stomach
37	chr9:96381000-96385200	Enhancers	Primary T cells fromperipheralblood	blood
38	chr9:96381200-96384000	Enhancers	Ovary	ovary
39	chr9:96381200-96384200	Weak transcription	Fetal Intestine Large	intestine
40	chr9:96381200-96385800	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr9:96381400-96385400	Enhancers	Pancreas	Pancrea
42	chr9:96381400-96385800	Enhancers	Left Ventricle	heart
43	chr9:96381800-96384200	Enhancers	Fetal Muscle Leg	muscle
44	chr9:96382000-96384200	Enhancers	Stomach Smooth Muscle	stomach
45	chr9:96382000-96385400	Enhancers	Lung	lung
46	chr9:96382200-96384000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr9:96382200-96384600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr9:96382400-96384200	Enhancers	Liver	Liver
49	chr9:96382600-96384000	Weak transcription	Fetal Intestine Small	intestine
50	chr9:96382800-96384200	Weak transcription	Brain Cingulate Gyrus	brain

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