Variant report

Variant	rs560022072
Chromosome Location	chr10:52264058-52264059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52261590..52264231-chr10:52382016..52385854,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054775	chr10:51595893-52392361	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv895391	chr10:52260398-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv895392	chr10:52263910-52291608	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52247000-52271200	Weak transcription	Colon Smooth Muscle	Colon
2	chr10:52249200-52266800	Weak transcription	Primary B cells from cord blood	blood
3	chr10:52253800-52268200	Weak transcription	Fetal Intestine Small	intestine
4	chr10:52255000-52267200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:52255400-52266600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:52258000-52266600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr10:52258000-52266600	Weak transcription	Ovary	ovary
8	chr10:52258000-52267200	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:52258000-52271800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:52260800-52264400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr10:52260800-52264600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr10:52260800-52264600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr10:52260800-52264600	Enhancers	Brain Cingulate Gyrus	brain
14	chr10:52261000-52268200	Weak transcription	Gastric	stomach
15	chr10:52261400-52264400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:52261400-52266600	Weak transcription	Fetal Lung	lung
17	chr10:52261600-52264200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr10:52261600-52264200	Enhancers	Fetal Heart	heart
19	chr10:52261600-52264400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:52261600-52264600	Enhancers	Brain Hippocampus Middle	brain
21	chr10:52261800-52264200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr10:52261800-52264600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr10:52261800-52266000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:52261800-52271400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr10:52262000-52266800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:52262000-52270800	Weak transcription	HSMMtube	muscle
27	chr10:52262200-52265400	Weak transcription	Pancreas	Pancrea
28	chr10:52262200-52266200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr10:52262200-52267400	Weak transcription	Small Intestine	intestine
30	chr10:52262200-52271200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:52262200-52287200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:52262400-52266400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:52262400-52266400	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr10:52262400-52267600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr10:52262400-52267800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr10:52262400-52268600	Weak transcription	A549	lung
37	chr10:52262400-52270600	Weak transcription	Primary T cells from cord blood	blood
38	chr10:52262400-52271800	Weak transcription	Fetal Stomach	stomach
39	chr10:52262400-52272600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr10:52262600-52265200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr10:52262600-52267800	Weak transcription	Fetal Intestine Large	intestine
42	chr10:52262600-52271200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:52262800-52264800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:52262800-52266400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:52262800-52267600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr10:52262800-52273000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr10:52263000-52267600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr10:52263200-52266200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr10:52263200-52266600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:52263400-52264400	Enhancers	Hela-S3	cervix

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