Variant report

Variant	rs560026152
Chromosome Location	chr11:17214222-17214223
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:17214202-17214381	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17207589..17210389-chr11:17212889..17214960,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213779	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv982988	chr11:17213952-17215900	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17156600-17219200	Weak transcription	HSMMtube	muscle
2	chr11:17158000-17215600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr11:17165200-17215200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:17167400-17228000	Weak transcription	Fetal Thymus	thymus
5	chr11:17172600-17214600	Weak transcription	Fetal Brain Female	brain
6	chr11:17184800-17228800	Weak transcription	Esophagus	oesophagus
7	chr11:17187000-17228000	Weak transcription	Colonic Mucosa	Colon
8	chr11:17187200-17226800	Weak transcription	Small Intestine	intestine
9	chr11:17191000-17220600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr11:17191200-17227800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr11:17191400-17214400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr11:17192000-17214400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:17192400-17214400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:17192400-17217800	Weak transcription	Stomach Mucosa	stomach
15	chr11:17194000-17215400	Weak transcription	A549	lung
16	chr11:17194200-17214400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr11:17194200-17228000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr11:17197000-17215600	Weak transcription	Brain Germinal Matrix	brain
19	chr11:17197600-17228000	Weak transcription	Brain Angular Gyrus	brain
20	chr11:17198600-17214400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:17199600-17215400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr11:17203000-17228800	Weak transcription	Spleen	Spleen
23	chr11:17205400-17220200	Weak transcription	Aorta	Aorta
24	chr11:17207400-17228200	Weak transcription	Colon Smooth Muscle	Colon
25	chr11:17207800-17215000	Weak transcription	Gastric	stomach
26	chr11:17208600-17215600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:17208800-17227400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:17209400-17228000	Weak transcription	K562	blood
29	chr11:17209800-17217400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:17210000-17220200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:17210200-17220400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:17210400-17214400	Strong transcription	Fetal Intestine Small	intestine
33	chr11:17210400-17227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:17210600-17214400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:17210600-17214400	Weak transcription	Brain Anterior Caudate	brain
36	chr11:17210600-17228200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr11:17210600-17228200	Weak transcription	Brain Substantia Nigra	brain
38	chr11:17210800-17222400	Weak transcription	Psoas Muscle	Psoas
39	chr11:17210800-17228000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr11:17211000-17214400	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr11:17211000-17214400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:17211200-17214600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:17211200-17216600	Strong transcription	Fetal Stomach	stomach
44	chr11:17211400-17215400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr11:17212200-17214400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr11:17212200-17216000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:17212200-17216000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr11:17212200-17216000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:17212200-17216000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr11:17212200-17216200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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