Variant report

Variant	rs560050637
Chromosome Location	chr1:174161461-174161462
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:174158960..174161694-chr1:174164662..174167169,2	K562	blood:
2	chr1:174134604..174137057-chr1:174160693..174163339,2	K562	blood:
3	chr1:174161180..174162878-chr1:174165954..174168802,3	K562	blood:
4	chr1:174159869..174162419-chr1:174173364..174176167,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872552	chr1:174061844-174469748	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1008314	chr1:174080192-174311023	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv535207	chr1:174080192-174311023	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	esv1799250	chr1:174119038-174484277	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
5	esv1800060	chr1:174132703-174501836	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv465672	chr1:174133251-174469905	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv548194	chr1:174133251-174469905	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv470746	chr1:174150850-174469905	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
9	nsv825442	chr1:174160121-174162508	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:174129600-174164800	Weak transcription	Gastric	stomach
2	chr1:174129600-174173200	Weak transcription	Pancreas	Pancrea
3	chr1:174144000-174178200	Weak transcription	Left Ventricle	heart
4	chr1:174154200-174173600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr1:174159000-174163600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:174159800-174170200	Weak transcription	Fetal Intestine Small	intestine
7	chr1:174160000-174163200	Weak transcription	K562	blood
8	chr1:174160000-174163400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:174160000-174163600	Weak transcription	Dnd41	blood
10	chr1:174160000-174173600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:174160200-174161600	Enhancers	NHDF-Ad	bronchial
12	chr1:174160200-174163000	Weak transcription	Placenta	Placenta
13	chr1:174160200-174163200	Weak transcription	Right Atrium	heart
14	chr1:174160200-174163600	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr1:174160600-174161600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:174160600-174173800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr1:174160800-174169600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr1:174160800-174169800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr1:174160800-174186600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:174161000-174161800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:174161000-174162000	Enhancers	Hela-S3	cervix
22	chr1:174161000-174162400	Enhancers	GM12878-XiMat	blood
23	chr1:174161000-174163600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr1:174161000-174166400	Weak transcription	Fetal Heart	heart
25	chr1:174161000-174169000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:174161000-174169400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr1:174161000-174172200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr1:174161000-174172400	Weak transcription	Fetal Intestine Large	intestine
29	chr1:174161000-174173600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr1:174161000-174176200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:174161200-174176600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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