Variant report

Variant	rs56005304
Chromosome Location	chr11:10637952-10637953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10466518	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10500729	0.85[EUR][1000 genomes]
rs11823069	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828221	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16908063	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16908075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57903840	1.00[EUR][1000 genomes]
rs58461960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs724724	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10628200-10640200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr11:10628600-10645600	Weak transcription	Brain Anterior Caudate	brain
3	chr11:10629000-10640400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:10629400-10643800	Weak transcription	Lung	lung
5	chr11:10629400-10644600	Weak transcription	Esophagus	oesophagus
6	chr11:10629400-10650800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:10629400-10663600	Weak transcription	Fetal Intestine Large	intestine
8	chr11:10629600-10662800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:10630200-10639200	Weak transcription	Spleen	Spleen
10	chr11:10630800-10645200	Weak transcription	Brain Hippocampus Middle	brain
11	chr11:10632600-10640000	Weak transcription	Colon Smooth Muscle	Colon
12	chr11:10633800-10638600	Weak transcription	Aorta	Aorta
13	chr11:10633800-10647000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:10634800-10638400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:10635600-10643600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:10635800-10638400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:10635800-10638600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10635800-10638600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:10635800-10639600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:10635800-10640600	Weak transcription	NHLF	lung
21	chr11:10635800-10643800	Weak transcription	Ovary	ovary
22	chr11:10635800-10644800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr11:10635800-10645400	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:10635800-10646000	Weak transcription	Fetal Intestine Small	intestine
25	chr11:10636000-10638000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:10637400-10640600	Strong transcription	Fetal Stomach	stomach
27	chr11:10637400-10641400	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr11:10637400-10646000	Weak transcription	Stomach Mucosa	stomach
29	chr11:10637600-10638600	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr11:10637600-10640600	Enhancers	Primary B cells from cord blood	blood
31	chr11:10637600-10641400	Enhancers	Primary B cells from peripheral blood	blood
32	chr11:10637800-10640000	Strong transcription	Stomach Smooth Muscle	stomach
33	chr11:10637800-10641400	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr11:10637800-10659200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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