Variant report

Variant	rs560067173
Chromosome Location	chr4:100850607-100850608
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:100849849..100851641-chr4:100861198..100863933,2	K562	blood:
2	chr4:100848205..100853069-chr4:100866591..100869335,5	MCF-7	breast:
3	chr4:100849266..100851363-chr4:100851727..100854069,2	K562	blood:

Variant related genes	Relation type
ENSG00000164031	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879661	chr4:100805207-100869635	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv879662	chr4:100849466-100876648	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:100816000-100867000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:100816000-100867000	Weak transcription	Lung	lung
3	chr4:100816200-100851400	Weak transcription	A549	lung
4	chr4:100816200-100851600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:100816200-100853600	Weak transcription	NHLF	lung
6	chr4:100816200-100866200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:100820000-100866200	Weak transcription	Fetal Heart	heart
8	chr4:100824000-100865800	Weak transcription	Psoas Muscle	Psoas
9	chr4:100824400-100866000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr4:100824800-100854200	Weak transcription	Brain Anterior Caudate	brain
11	chr4:100827600-100856400	Weak transcription	Brain Substantia Nigra	brain
12	chr4:100828800-100866200	Weak transcription	Stomach Mucosa	stomach
13	chr4:100829200-100856400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr4:100829200-100866600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr4:100829400-100852600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:100829400-100856200	Weak transcription	HepG2	liver
17	chr4:100829600-100866200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr4:100836600-100856800	Weak transcription	Spleen	Spleen
19	chr4:100836800-100851800	Strong transcription	Dnd41	blood
20	chr4:100837600-100852600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr4:100838400-100852000	Strong transcription	Fetal Thymus	thymus
22	chr4:100839000-100852200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:100839200-100855600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr4:100839200-100857400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:100840000-100852800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr4:100840000-100862600	Weak transcription	K562	blood
27	chr4:100840200-100854000	Weak transcription	Brain Germinal Matrix	brain
28	chr4:100840200-100864600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:100840200-100865800	Weak transcription	Ovary	ovary
30	chr4:100840200-100866000	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:100840200-100867000	Weak transcription	Gastric	stomach
32	chr4:100840400-100851000	Weak transcription	Fetal Brain Male	brain
33	chr4:100840400-100851400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:100840400-100851600	Weak transcription	Fetal Brain Female	brain
35	chr4:100840400-100852400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:100840400-100855000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:100840400-100855200	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:100840400-100856400	Weak transcription	Fetal Kidney	kidney
39	chr4:100840400-100856400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:100840400-100856800	Weak transcription	Thymus	Thymus
41	chr4:100840400-100864600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr4:100840400-100866800	Weak transcription	Aorta	Aorta
43	chr4:100840400-100867000	Weak transcription	Esophagus	oesophagus
44	chr4:100840600-100852000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr4:100840600-100862200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr4:100840800-100854600	Weak transcription	Fetal Muscle Leg	muscle
47	chr4:100840800-100854800	Weak transcription	Fetal Lung	lung
48	chr4:100840800-100855600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:100840800-100858200	Weak transcription	Fetal Stomach	stomach
50	chr4:100842000-100852200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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