Variant report

Variant	rs56009110
Chromosome Location	chr7:6307925-6307926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:6306666..6309217-chr7:6522302..6523810,2	K562	blood:
2	chr7:6293639..6295897-chr7:6307498..6309548,2	MCF-7	breast:
3	chr7:6307014..6308787-chr7:6412826..6414965,2	K562	blood:
4	chr7:6307491..6309134-chr7:6317243..6319734,2	K562	blood:
5	chr7:6307201..6310228-chr7:6310974..6314712,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136238	Chromatin interaction
ENSG00000008256	Chromatin interaction
ENSG00000136240	Chromatin interaction
ENSG00000269781	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10215951	1.00[EUR][1000 genomes]
rs11982134	1.00[EUR][1000 genomes]
rs58221310	1.00[EUR][1000 genomes]
rs59898429	1.00[EUR][1000 genomes]
rs6463539	1.00[EUR][1000 genomes]
rs6942707	1.00[EUR][1000 genomes]
rs6959408	1.00[EUR][1000 genomes]
rs7784130	1.00[EUR][1000 genomes]
rs7800466	1.00[EUR][1000 genomes]
rs7805483	1.00[EUR][1000 genomes]
rs958329	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
2	nsv948912	chr7:5803903-6623553	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
3	nsv1034060	chr7:5814823-6745710	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
4	nsv538711	chr7:5814823-6745710	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	138 gene(s)	inside rSNPs	diseases
5	nsv1028242	chr7:5819084-6645024	Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
6	nsv538712	chr7:5819084-6645024	Weak transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	127 gene(s)	inside rSNPs	diseases
7	nsv949531	chr7:5949371-6753694	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	129 gene(s)	inside rSNPs	diseases
8	nsv1021037	chr7:6070792-6426966	Strong transcription Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
9	nsv538713	chr7:6070792-6426966	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
10	nsv530989	chr7:6176729-6438197	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
11	nsv482829	chr7:6231809-6407606	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1032987	chr7:6246313-6373054	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv538714	chr7:6246313-6373054	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1020236	chr7:6248930-6690377	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
15	nsv497874	chr7:6296768-6614902	Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:6288200-6310400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:6296800-6308400	Weak transcription	HMEC	breast
3	chr7:6298400-6308600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:6299000-6310400	Weak transcription	Primary B cells from cord blood	blood
5	chr7:6299200-6310600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:6300200-6308600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:6300200-6310200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:6300400-6308400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr7:6300400-6308600	Weak transcription	Aorta	Aorta
10	chr7:6300400-6310400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:6300600-6308600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr7:6300600-6310200	Weak transcription	Fetal Kidney	kidney
13	chr7:6300600-6310400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr7:6300800-6308600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr7:6301000-6308200	Weak transcription	Fetal Lung	lung
16	chr7:6301000-6309000	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:6301200-6308800	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:6301200-6310400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:6301200-6310400	Weak transcription	Colonic Mucosa	Colon
20	chr7:6302000-6310200	Weak transcription	NH-A	brain
21	chr7:6302200-6308400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr7:6302400-6310400	Weak transcription	Fetal Stomach	stomach
23	chr7:6302600-6308600	Weak transcription	NHLF	lung
24	chr7:6302600-6308800	Weak transcription	HSMM	muscle
25	chr7:6302600-6308800	Weak transcription	HSMMtube	muscle
26	chr7:6302600-6310200	Weak transcription	Osteobl	bone
27	chr7:6302800-6308600	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr7:6303200-6308400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:6303200-6308600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr7:6303200-6308600	Weak transcription	Adipose Nuclei	Adipose
31	chr7:6303400-6308400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:6303400-6308600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr7:6303400-6308600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:6303400-6308600	Weak transcription	NHDF-Ad	bronchial
35	chr7:6304800-6308200	Weak transcription	Fetal Heart	heart
36	chr7:6304800-6308600	Weak transcription	Right Ventricle	heart
37	chr7:6304800-6310400	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:6305000-6308600	Weak transcription	Spleen	Spleen
39	chr7:6305400-6308600	Weak transcription	Ovary	ovary
40	chr7:6305800-6309200	Enhancers	Psoas Muscle	Psoas
41	chr7:6306000-6308600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr7:6306200-6309400	Enhancers	Placenta	Placenta
43	chr7:6306400-6308400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:6306600-6308600	Enhancers	Duodenum Mucosa	Duodenum
45	chr7:6306800-6308200	Weak transcription	Stomach Mucosa	stomach
46	chr7:6306800-6308200	Weak transcription	K562	blood
47	chr7:6306800-6308400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr7:6306800-6308600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr7:6306800-6308600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr7:6306800-6308600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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