Variant report

Variant	rs560092487
Chromosome Location	chr14:69920942-69920943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69865072..69867138-chr14:69919938..69922880,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1048882	chr14:69920881-69976694	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
3	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
4	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
5	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
6	chr14:69890800-69922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:69891200-69922800	Weak transcription	Colonic Mucosa	Colon
8	chr14:69891200-69923000	Weak transcription	NHLF	lung
9	chr14:69892200-69931400	Weak transcription	K562	blood
10	chr14:69893000-69922800	Weak transcription	Aorta	Aorta
11	chr14:69893200-69926800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr14:69893400-69922200	Weak transcription	Left Ventricle	heart
13	chr14:69893400-69922400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr14:69893400-69922600	Weak transcription	Brain Germinal Matrix	brain
15	chr14:69893400-69922800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:69893400-69923000	Weak transcription	Lung	lung
17	chr14:69893600-69922000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr14:69893600-69922400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr14:69893600-69922400	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:69893600-69922800	Weak transcription	Brain Hippocampus Middle	brain
21	chr14:69893600-69923200	Weak transcription	Gastric	stomach
22	chr14:69893600-69925000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:69894000-69922200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:69894000-69922800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr14:69894000-69924400	Weak transcription	Brain Angular Gyrus	brain
26	chr14:69894600-69921800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:69894600-69922200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:69894600-69922800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr14:69895600-69921400	Weak transcription	NH-A	brain
30	chr14:69896800-69922400	Weak transcription	Brain Anterior Caudate	brain
31	chr14:69897000-69922000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr14:69902400-69927000	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr14:69903600-69922200	Weak transcription	Small Intestine	intestine
34	chr14:69903600-69937800	Weak transcription	Psoas Muscle	Psoas
35	chr14:69906600-69921400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:69906800-69921200	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr14:69906800-69921400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr14:69906800-69922400	Weak transcription	H9 Cell Line	embryonic stem cell
39	chr14:69906800-69924400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr14:69906800-69924400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:69908400-69922400	Weak transcription	Fetal Brain Female	brain
42	chr14:69909000-69933200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
43	chr14:69909200-69921400	Weak transcription	Fetal Kidney	kidney
44	chr14:69909200-69922400	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr14:69909400-69922800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr14:69909800-69921400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr14:69910200-69923000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr14:69910400-69922200	Weak transcription	HUVEC	blood vessel
49	chr14:69910400-69927200	Weak transcription	NHEK	skin
50	chr14:69910800-69923000	Weak transcription	Thymus	Thymus

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