Variant report

Variant	rs560094760
Chromosome Location	chr15:77327276-77327277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:77326760-77327369	PANC-1	pancreas:	n/a	n/a
2	POLR2A	chr15:77326961-77328926	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr15:77326801-77327309	HUVEC	blood vessel:	n/a	n/a
4	BCL3	chr15:77326777-77327284	A549	lung:	n/a	n/a
5	MTA3	chr15:77327225-77328297	GM12878	blood:	n/a	n/a
6	BCL3	chr15:77326463-77328028	A549	lung:	n/a	n/a
7	RAD21	chr15:77327252-77327940	HCT-116	colon:	n/a	chr15:77327610-77327622 chr15:77327606-77327620 chr15:77327608-77327621 chr15:77327605-77327624 chr15:77327358-77327371
8	POLR2A	chr15:77326913-77327396	HUVEC	blood vessel:	n/a	n/a
9	POLR2A	chr15:77327264-77327432	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr15:77320435-77330647	HL-60	blood:	n/a	n/a
11	POLR2A	chr15:77325875-77328912	HepG2	liver:	n/a	n/a
12	POLR2A	chr15:77321667-77330508	Hela-S3	cervix:	n/a	n/a
13	POLR2A	chr15:77327116-77328160	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr15:77326005-77330121	GM18505	blood:	n/a	n/a
15	MAZ	chr15:77327257-77327844	IMR90	lung:	n/a	chr15:77327371-77327382
16	CTCF	chr15:77327160-77327310	HRE	kidney:	n/a	n/a
17	POLR2A	chr15:77327223-77327342	ProgFib	skin:	n/a	n/a
18	POLR2A	chr15:77327014-77330569	HL-60	blood:	n/a	n/a
19	POLR2A	chr15:77323762-77330075	SK-N-MC	brain:	n/a	n/a
20	POLR2A	chr15:77326803-77327957	HUVEC	blood vessel:	n/a	n/a
21	CTCF	chr15:77327054-77328197	A549	lung:	n/a	chr15:77327788-77327797 chr15:77327607-77327620 chr15:77327618-77327634 chr15:77327606-77327627 chr15:77327604-77327622 chr15:77327784-77327797 chr15:77327324-77327337 chr15:77327605-77327621
22	POLR2A	chr15:77327221-77327490	A549	lung:	n/a	n/a
23	POLR2A	chr15:77326578-77329129	PFSK-1	brain:	n/a	n/a
24	ZNF263	chr15:77326901-77329004	HEK293-T-REx	kidney:	n/a	chr15:77326963-77326972 chr15:77327949-77327958 chr15:77327328-77327337 chr15:77327639-77327648 chr15:77327621-77327642
25	POLR2A	chr15:77327252-77327507	A549	lung:	n/a	n/a
26	CTCF	chr15:77327263-77327786	GM12891	blood:	n/a	chr15:77327607-77327620 chr15:77327618-77327634 chr15:77327606-77327627 chr15:77327604-77327622 chr15:77327324-77327337 chr15:77327605-77327621
27	POLR2A	chr15:77326160-77329613	K562	blood:	n/a	n/a
28	CTCF	chr15:77327264-77327416	GM19240	blood:	n/a	chr15:77327324-77327337
29	JUND	chr15:77327248-77328758	A549	lung:	n/a	n/a
30	POLR2A	chr15:77326749-77329500	A549	lung:	n/a	n/a
31	BHLHE40	chr15:77327273-77327720	K562	blood:	n/a	chr15:77327366-77327387 chr15:77327372-77327381 chr15:77327370-77327383 chr15:77327371-77327380 chr15:77327372-77327381
32	POLR2A	chr15:77327173-77327437	K562	blood:	n/a	n/a
33	POLR2A	chr15:77326585-77329462	GM19193	blood:	n/a	n/a
34	POLR2A	chr15:77326929-77328729	SK-N-MC	brain:	n/a	n/a
35	CTCF	chr15:77327193-77327914	HCT-116	colon:	n/a	chr15:77327788-77327797 chr15:77327607-77327620 chr15:77327618-77327634 chr15:77327606-77327627 chr15:77327604-77327622 chr15:77327784-77327797 chr15:77327324-77327337 chr15:77327605-77327621
36	POLR2A	chr15:77327196-77327630	H1-neurons	neurons:	n/a	n/a
37	POLR2A	chr15:77327205-77327520	A549	lung:	n/a	n/a
38	POLR2A	chr15:77327263-77328195	Hela-S3	cervix:	n/a	n/a
39	POLR2A	chr15:77326675-77327653	HepG2	liver:	n/a	n/a
40	FOSL2	chr15:77327150-77327754	HepG2	liver:	n/a	n/a
41	POLR2A	chr15:77327258-77327521	GM12878	blood:	n/a	n/a
42	POLR2A	chr15:77327132-77328034	A549	lung:	n/a	n/a
43	POLR2A	chr15:77326759-77327594	HepG2	liver:	n/a	n/a
44	POLR2A	chr15:77327145-77329493	GM18951	blood:	n/a	n/a
45	CTCF	chr15:77326963-77328000	SK-N-SH	brain:	n/a	chr15:77327788-77327797 chr15:77327607-77327620 chr15:77327618-77327634 chr15:77327606-77327627 chr15:77327000-77327008 chr15:77327604-77327622 chr15:77327784-77327797 chr15:77327324-77327337 chr15:77327605-77327621 chr15:77326982-77327000
46	POLR2A	chr15:77327276-77327489	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr15:77327274-77327413	NHEK	skin:	n/a	chr15:77327324-77327337

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77320466..77323005-chr15:77324460..77327682,3	MCF-7	breast:

Variant related genes	Relation type
PSTPIP1	TF binding region
ENSG00000140368	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	esv3367577	chr15:77015618-77442634	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	esv2758388	chr15:77170550-77373448	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2760041	chr15:77170550-77373448	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv833058	chr15:77235895-77393640	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv517068	chr15:77254544-77381222	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	esv1808532	chr15:77257714-77332539	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1035874	chr15:77266776-77328742	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	esv1822592	chr15:77283956-77332539	Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	nsv570111	chr15:77286693-77332606	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	nsv1048833	chr15:77294593-77339260	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv1848501	chr15:77301357-77327571	Bivalent Enhancer Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv1804890	chr15:77302969-77332482	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
15	esv1836749	chr15:77302969-77332606	Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
16	nsv904414	chr15:77304310-77400388	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	esv1842687	chr15:77307260-77332606	Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	esv1823196	chr15:77323029-77332606	Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv1830802	chr15:77323029-77332606	Weak transcription Genic enhancers Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	esv1839663	chr15:77323029-77332606	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	esv1841067	chr15:77323029-77332606	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv570112	chr15:77326746-77332482	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	nsv570113	chr15:77326746-77332606	Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv570114	chr15:77326746-77334499	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77308800-77327600	Weak transcription	Esophagus	oesophagus
2	chr15:77312200-77328400	Weak transcription	Aorta	Aorta
3	chr15:77313000-77327800	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:77314600-77328000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:77314800-77330000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:77315400-77330400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr15:77315400-77330600	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:77316800-77327600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:77316800-77327800	Weak transcription	GM12878-XiMat	blood
10	chr15:77316800-77330200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr15:77317400-77329800	Strong transcription	Primary T cells from cord blood	blood
12	chr15:77317400-77330600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:77317600-77330400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:77318400-77350600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:77321000-77328200	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr15:77321000-77328200	Weak transcription	Right Ventricle	heart
17	chr15:77321000-77328600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr15:77321200-77328200	Weak transcription	Pancreas	Pancrea
19	chr15:77321200-77330200	Weak transcription	Brain Germinal Matrix	brain
20	chr15:77321200-77331000	Weak transcription	Fetal Brain Female	brain
21	chr15:77321200-77335400	Weak transcription	Left Ventricle	heart
22	chr15:77321200-77362000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:77322000-77328000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr15:77322200-77327800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr15:77322400-77328200	Enhancers	Fetal Muscle Leg	muscle
26	chr15:77322800-77328000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr15:77322800-77328200	Weak transcription	A549	lung
28	chr15:77322800-77328400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:77323000-77327600	Weak transcription	NHEK	skin
30	chr15:77323000-77328000	Weak transcription	Duodenum Mucosa	Duodenum
31	chr15:77323000-77328400	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr15:77323000-77336000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr15:77323200-77327600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:77323200-77327600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr15:77323200-77330600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:77323200-77334200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr15:77323400-77328400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:77323400-77346000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr15:77323800-77327400	Weak transcription	Fetal Lung	lung
40	chr15:77323800-77328200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr15:77323800-77334200	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:77324000-77327600	Enhancers	Fetal Intestine Large	intestine
43	chr15:77324000-77329800	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr15:77324200-77327800	Weak transcription	Primary B cells from cord blood	blood
45	chr15:77324200-77328400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr15:77324200-77329600	Weak transcription	Primary hematopoietic stem cells	blood
47	chr15:77324200-77335200	Weak transcription	NH-A	brain
48	chr15:77324400-77327600	Weak transcription	Colonic Mucosa	Colon
49	chr15:77324400-77327600	Enhancers	Fetal Intestine Small	intestine
50	chr15:77324400-77328000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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