Variant report

Variant	rs56009808
Chromosome Location	chr4:106515239-106515240
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10020712	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516519	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1374530	0.93[ASN][1000 genomes]
rs59428412	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs715706	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs722496	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72669965	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106509000-106540400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:106509400-106515400	Weak transcription	Fetal Kidney	kidney
3	chr4:106509600-106515400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:106513400-106519400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:106513800-106518800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:106514000-106515800	Enhancers	Fetal Intestine Large	intestine
7	chr4:106514000-106515800	Enhancers	Fetal Intestine Small	intestine
8	chr4:106514800-106517200	Weak transcription	Pancreas	Pancrea
9	chr4:106515000-106516000	Enhancers	A549	lung
10	chr4:106515000-106516400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr4:106515200-106515600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:106515200-106515600	Enhancers	Stomach Mucosa	stomach
13	chr4:106515200-106515600	Active TSS	GM12878-XiMat	blood
14	chr4:106515200-106515800	Flanking Active TSS	Liver	Liver
15	chr4:106515200-106516000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr4:106515200-106516000	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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