Variant report

Variant	rs56009898
Chromosome Location	chr2:30332268-30332269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73923280	0.88[AFR][1000 genomes]
rs73923281	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30327400-30337600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:30329800-30332600	Weak transcription	HMEC	breast
3	chr2:30329800-30332800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:30330200-30333600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:30330800-30333600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:30331400-30335600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr2:30331600-30333600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr2:30332000-30336200	Weak transcription	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links