Variant report

Variant	rs56010291
Chromosome Location	chr12:106502293-106502294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:106494133..106496771-chr12:106501271..106503780,3	MCF-7	breast:
2	chr12:106501658..106504096-chr12:106533862..106535852,2	MCF-7	breast:
3	chr12:106499591..106503536-chr12:106504416..106508585,6	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55748925	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832509	chr12:106363888-106516221	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106492000-106504400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:106493400-106512400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr12:106495600-106507200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr12:106498400-106507200	Weak transcription	Pancreas	Pancrea
5	chr12:106499400-106503800	Enhancers	Brain Germinal Matrix	brain
6	chr12:106499400-106504000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr12:106499400-106505400	Enhancers	Fetal Intestine Small	intestine
8	chr12:106499600-106502800	Enhancers	Colon Smooth Muscle	Colon
9	chr12:106499600-106503000	Enhancers	Fetal Kidney	kidney
10	chr12:106499600-106503000	Enhancers	Ovary	ovary
11	chr12:106499600-106503200	Enhancers	Muscle Satellite Cultured Cells	--
12	chr12:106499600-106503200	Enhancers	Fetal Muscle Leg	muscle
13	chr12:106499600-106503400	Enhancers	Psoas Muscle	Psoas
14	chr12:106499600-106503600	Enhancers	Brain Anterior Caudate	brain
15	chr12:106499600-106503600	Enhancers	Hela-S3	cervix
16	chr12:106499600-106503800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr12:106499600-106504200	Enhancers	Fetal Brain Male	brain
18	chr12:106499600-106504600	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr12:106499600-106505000	Enhancers	Fetal Intestine Large	intestine
20	chr12:106499600-106505000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr12:106499600-106505200	Enhancers	Brain Cingulate Gyrus	brain
22	chr12:106499600-106511400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr12:106499800-106503200	Enhancers	NH-A	brain
24	chr12:106499800-106507800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr12:106499800-106508400	Genic enhancers	HSMM	muscle
26	chr12:106500000-106503000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr12:106500000-106503400	Enhancers	Osteobl	bone
28	chr12:106500000-106503800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr12:106500000-106503800	Enhancers	Fetal Lung	lung
30	chr12:106500000-106506200	Enhancers	NHEK	skin
31	chr12:106500000-106507000	Enhancers	Adipose Nuclei	Adipose
32	chr12:106500000-106507400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr12:106500000-106510000	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr12:106500200-106502400	Enhancers	NHLF	lung
35	chr12:106500200-106502800	Enhancers	Fetal Stomach	stomach
36	chr12:106500200-106502800	Enhancers	NHDF-Ad	bronchial
37	chr12:106500200-106503600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr12:106500200-106503600	Enhancers	Aorta	Aorta
39	chr12:106500200-106505200	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr12:106500200-106507400	Enhancers	H1 Cell Line	embryonic stem cell
41	chr12:106500200-106510200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr12:106500200-106514000	Enhancers	Liver	Liver
43	chr12:106500400-106502800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr12:106500400-106503200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr12:106500400-106503200	Enhancers	Placenta	Placenta
46	chr12:106500400-106503200	Enhancers	HMEC	breast
47	chr12:106500400-106505400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr12:106500400-106505800	Enhancers	Brain Substantia Nigra	brain
49	chr12:106500600-106502600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr12:106500600-106502800	Enhancers	Fetal Muscle Trunk	muscle

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